View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18847_low_35 (Length: 247)
Name: NF18847_low_35
Description: NF18847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18847_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 5 - 231
Target Start/End: Original strand, 32413849 - 32414063
Alignment:
| Q |
5 |
gagcagcacagagatgagaaacaaaatttttacgagtgtcctcgcctctaaaattgatgaacacttcgtatatccatcgttgtgagtgagaagacattga |
104 |
Q |
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| T |
32413849 |
gagcagcatcgagatgagaaacaaaatttttacgagtgtcctcgcctctaaaattgatgaacactttgtatatccatcgttgtgagtgagaagacattga |
32413948 |
T |
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| Q |
105 |
tggtaatactaaaagtaaggatttctccaagttggaaatatggtgaattcagatttcaaaggaggatttaaaggtggaactgggaatagccagcaggatt |
204 |
Q |
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| T |
32413949 |
tggtaatactaaaagtaaggatttctccaagttgggaatatggtgaattcagatttcaaagga------------ggaactgggaatagccagcaggatt |
32414036 |
T |
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| Q |
205 |
cttcttgattgtaacggtggttgatac |
231 |
Q |
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| T |
32414037 |
cttcttgattgtaacggtggttgatac |
32414063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 3395159 - 3395235
Alignment:
| Q |
5 |
gagcagcacagagatgagaaacaaaatttttacgagtgtcctcgcctctaaaattgatgaacacttcgtatatccat |
81 |
Q |
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| T |
3395159 |
gagcagcatagagatgagaaacaaaagtcttgcgagtatctttccctctaaaattgatgaacacgtcgtgtatccat |
3395235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 81
Target Start/End: Complemental strand, 3309648 - 3309581
Alignment:
| Q |
14 |
agagatgagaaacaaaatttttacgagtgtcctcgcctctaaaattgatgaacacttcgtatatccat |
81 |
Q |
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| T |
3309648 |
agagatgagaaacaaaattgttgcgagtgtcttttcccctgaaattgatgaacacgtcgtataaccat |
3309581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 15775407 - 15775342
Alignment:
| Q |
16 |
agatgagaaacaaaatttttacgagtgtcctcgcctctaaaattgatgaacacttcgtatatccat |
81 |
Q |
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||||||||||| ||||| ||||||| || || || |||||||| |||||||||||||| |||||| |
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| T |
15775407 |
agatgagaaacgaaattgctacgagtatcttcccccctaaaatttatgaacacttcgtagatccat |
15775342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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