View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18847_low_4 (Length: 610)
Name: NF18847_low_4
Description: NF18847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18847_low_4 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 18 - 610
Target Start/End: Complemental strand, 30212532 - 30211937
Alignment:
| Q |
18 |
attattactttccaaacccatgtagatttatgtgactctacctagtacnnnnnnnnnnn-----gaaggatctacctagtacttttatctttaactccaa |
112 |
Q |
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| T |
30212532 |
attattactttccaaacacatgtagatttatgtgactctacctagtacttttttttttttttttgaaggatctacctagtacttttatctttaactccaa |
30212433 |
T |
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| Q |
113 |
attcttttttgtttagaaaaagttaagaaacgtggtaattttaaaattaacaaaattgttttcacatattgataaatatgggtgtataataggccatatc |
212 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30212432 |
attcttttttgtttagaaaaagttaagaaacgtgataattttaaaattaacaaaattgttttcacatattgataaatatgggtgtataataggccatatc |
30212333 |
T |
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| Q |
213 |
gaccgacataggtctatagactacatcggatcaaggttatgctaagcnnnnnnnaaatagagaagaccaaaaaattttagaagtctatttaactaaaata |
312 |
Q |
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| T |
30212332 |
gaccgacattggtctatagactacatcggatcaaggttatactaagctttttttaaatagagaagatcaaaactttttagaagtctatttaactaaaata |
30212233 |
T |
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| Q |
313 |
ttgggctataccatnnnnnnnnnntattttagacccaccaaggctgacttacttaactaaatatgaattgattttttattactactattattgttatatt |
412 |
Q |
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|||| ||| ||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
30212232 |
ttggactagaccataaaaaaga--tattttagacctaccaaggctgacttacttaactaaatataaattgattttttattactactattattgttatatt |
30212135 |
T |
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| Q |
413 |
tgaaatgtgaatcatatacggttagattctttagaataattactagaatcactcgaaacaagttcaaaataatactacttctgaaaactgtcatatatag |
512 |
Q |
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|||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
30212134 |
tgaaatttgaatcatatacagttagatcctttagaataattactagaatcactcgaaacaagttcaaaataatactacttctgaaaactgtcatataaag |
30212035 |
T |
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| Q |
513 |
agtattcaagaagtcgtttaaggcaagcaattactgattcttcaacgccaaatattcagattcaaataagatacttggagaggaagttccttggaagt |
610 |
Q |
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||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
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| T |
30212034 |
agtgttcaagaagtcgtttaaggcaagtaattactgattcttcaacgccaaatattcagatgcaaataagaaacttggagaggaagttccttggaagt |
30211937 |
T |
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