View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18847_low_40 (Length: 224)
Name: NF18847_low_40
Description: NF18847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18847_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 20 - 216
Target Start/End: Original strand, 35046515 - 35046717
Alignment:
| Q |
20 |
cagtgctacttccatcacagcctttaccatcaataacagttttaaatgtcctcctgtgaacacaatgaccaaaagtatgcacaccatagatgtgagtact |
119 |
Q |
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| T |
35046515 |
cagtgctacttccatcacagcctttaccatcaataacagttttaaatgtcctcctgtgaacacaatgaccaaaagtatgcacaccatagatgtgagtact |
35046614 |
T |
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| Q |
120 |
atcgaatagc------aacattaatgttcatcaaatagagaaatgtgattatggataacctgtgcacttttgacctcctaccacgtgcggtaatttgatg |
213 |
Q |
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| T |
35046615 |
atcgaatagcaacattaacattaatgttcatcaaatagagaaatgcgattattgataacctgtgcacttttgacctcctaccacgtgcggtaatttgatg |
35046714 |
T |
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| Q |
214 |
atg |
216 |
Q |
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||| |
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| T |
35046715 |
atg |
35046717 |
T |
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Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 165 - 216
Target Start/End: Complemental strand, 17683217 - 17683166
Alignment:
| Q |
165 |
tggataacctgtgcacttttgacctcctaccacgtgcggtaatttgatgatg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17683217 |
tggataacctgtgcacttttgacctcctaccacgtgcggtaatttgatgatg |
17683166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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