View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18847_low_8 (Length: 472)
Name: NF18847_low_8
Description: NF18847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18847_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 9 - 456
Target Start/End: Original strand, 48270380 - 48270827
Alignment:
| Q |
9 |
acatcatcaccatcttatatgtttggggatatgcaggattctccaaactcagtttttggctatcaggatctttggaatatacaacaaggtaccttctttc |
108 |
Q |
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| T |
48270380 |
acatcatcaccatcttatatgtttggggatatgcaggattctccaaactcagtttttggctatcaggatctttggaatatacaacaaggtaccttctttc |
48270479 |
T |
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| Q |
109 |
caccttatgtactgagcaaacctacattggagaaagaaacctatttttataaggattactttggtgaaaatccaggaacctacaagaaatcaaatttaga |
208 |
Q |
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| T |
48270480 |
caccttatgtactgagcaaacctacattggagaaagaaacctatttttataaggattactttggtgaaaatccaggaacctacaagaaatcaaatttaga |
48270579 |
T |
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| Q |
209 |
tgcacaattggatggcaacctctacgagtcattcaaacagaatttaaattttgaaaatggttggtgtgacaaaggtgcgcaaattgttagtctaaaaaat |
308 |
Q |
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| T |
48270580 |
tgcacaattggatggcaacctctacgagtcattcaaacagaatttaaattttgaaaatggttggtgtgacaaaggttcgcaaattgttagtctaaaaaat |
48270679 |
T |
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| Q |
309 |
gtaactagttatagatggttgtataactcgtagcacatattcattttgttttgctttgtttattaaaggctcaaacgaagaccaacaacttaaagttgtt |
408 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48270680 |
gtaactagttatagatggttgcataactcgtagcacatattcattttgttttgctttgtttattaaaggctcaaacgaagaccaacaacttaaagttgtt |
48270779 |
T |
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| Q |
409 |
gctgaagatgtagcagcttctgttctgcacccatgtgctccttcaaat |
456 |
Q |
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| T |
48270780 |
gctgaagatgtagcagcttctgttctgcacccatgtgctccttcaaat |
48270827 |
T |
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