View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18848_high_1 (Length: 747)
Name: NF18848_high_1
Description: NF18848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18848_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 410371 - 410133
Alignment:
| Q |
12 |
agtgagatgaaatcagcggttgtgattgcttgatcaaatgagactaattccacaccaacagcacgtgctctatcagctggagcataagggtcatgagcaa |
111 |
Q |
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| T |
410371 |
agtgagatgaaatcagcggttgtgattgcttgatcaaatgaaactaattccacaccaacagcacgtgctctatcagctggagcataagggtcatgagcaa |
410272 |
T |
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| Q |
112 |
tcacattcattcctaatccttttgcacgccttgcaacttcagatccaacttttccaaatcccattattgctaatgttttcccaaccatagatactcccac |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
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| T |
410271 |
tcacattcattcctaatccttttgcacgccttgcaacttcagatccaacttttccaaaccccattattgctaatgttttcccaaccatagatactccaac |
410172 |
T |
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| Q |
212 |
atacttgcttcttagccattttcctgcaaaaattatcaa |
250 |
Q |
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|||||||||||| |||||||||||||||||||||||||| |
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| T |
410171 |
atacttgcttctcagccattttcctgcaaaaattatcaa |
410133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 538 - 729
Target Start/End: Complemental strand, 409833 - 409642
Alignment:
| Q |
538 |
aagataaatcatgaacatgtaccatacctgctttaagggaagcatcagcttgagaaacgttacgagccatagcagcaagaagagcaatcccatgttcagc |
637 |
Q |
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||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
409833 |
aagataaatcatgtaaatgtaccataccagctttaagggaagcatcagcttgagaaacgttacgagccatagcagcaagaagagcaatcccatgttcagc |
409734 |
T |
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| Q |
638 |
agcagcaatagtattagctgtaggagcattcacaacaagacaaccaaattcagtagcagcttgtagatccacattatcaatcccaacaccag |
729 |
Q |
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| T |
409733 |
agcagcaatagtattagcagtaggagcattcacaacaagacaaccaaattcagtagcagcttgtagatccacattatcaatcccaacaccag |
409642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 223
Target Start/End: Complemental strand, 48785548 - 48785408
Alignment:
| Q |
83 |
atcagctggagcataagggtcatgagcaatcacattcattcctaatccttttgcacgccttgcaacttcagatccaacttttccaaatcccattattgct |
182 |
Q |
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|||||| ||||||||||| ||||||||||| || ||||| || | || || |||||||| ||||| |||| |||||| || ||||||||||||| || |
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| T |
48785548 |
atcagcaggagcataaggatcatgagcaataaccttcataccaagccccttagcacgcctagcaacctcagttccaaccttcccaaatcccattacagca |
48785449 |
T |
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| Q |
183 |
aatgttttcccaaccatagatactcccacatacttgcttct |
223 |
Q |
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| T |
48785448 |
agtgtcttcccaactagggaaactccaacatacttacttct |
48785408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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