View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18848_low_3 (Length: 450)
Name: NF18848_low_3
Description: NF18848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18848_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 123 - 433
Target Start/End: Original strand, 15754213 - 15754521
Alignment:
| Q |
123 |
ttcattactcatgtttatatatgtttatcattgaatttgatagtttatgatctataattaaattctactattatatttatagataactgcgcagtacaat |
222 |
Q |
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| T |
15754213 |
ttcattactcatgtttatat--gttgatcattgaatttgatagtttatgatctataattaaattctactattatatttatagataactgcgaagtacaat |
15754310 |
T |
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| Q |
223 |
ttcaaagacctgagatttctaccaagaaaaataactgcgaagaaactctagttggagttttcagcctagttgatgcttgtagatcaggtgctttagaggc |
322 |
Q |
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| T |
15754311 |
ttcaaagacctgagatttctaccaagaaaaataactgtgaagaaactctagttggagttttcagcctagttgatgcttgtagatcaggtgctttagaggc |
15754410 |
T |
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| Q |
323 |
aatggaagagctaaagttattaggagtcagatcagtcatgctgacaggagatagctctcaggttgctatgtatgttcagagtcaggtatgatcaataatg |
422 |
Q |
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| T |
15754411 |
aatggaagagctaaagttattaggagtcagatcagtcatgctgacaggagatagctctcaggttgctatgtatgttcagagtcaggtatgatcaataatg |
15754510 |
T |
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| Q |
423 |
catatatttct |
433 |
Q |
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| T |
15754511 |
catatatttct |
15754521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 15754063 - 15754171
Alignment:
| Q |
1 |
tccaggggaaggaatttttggtacaattgatggtagagatatctatataggaaacaagagagttggtgtcagagctgtatgtaaaagaggtgattgtatt |
100 |
Q |
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| T |
15754063 |
tccaggggaaggaatttttggtacgattgatggtagagatatctatataggaaacaagagagttggtgtcagagctatatgtaaaagaggtgattgtatt |
15754162 |
T |
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| Q |
101 |
cagaactta |
109 |
Q |
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| T |
15754163 |
cagaactta |
15754171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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