View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18848_low_4 (Length: 415)
Name: NF18848_low_4
Description: NF18848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18848_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 164; Significance: 2e-87; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 167 - 407
Target Start/End: Original strand, 7802430 - 7802672
Alignment:
| Q |
167 |
gcacaccaacacaacatttgaataaagggcacaaataaattgacnnnnnnnttgattatagtacctgacaaaacaaaattactttagcccagaaaggtac |
266 |
Q |
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| T |
7802430 |
gcacaccaacacaacatttgaataaagggcacaaataaattaacaaaaaaattgattatagtacctgacaaaacaaaattactttagcccagaaaggtac |
7802529 |
T |
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| Q |
267 |
taagctctgaaaaaattgattatggtgagaaagcttcactcttttcatg--nnnnnnnnnatgacacgtgacatgcacgtgttcccaatttggattattt |
364 |
Q |
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| T |
7802530 |
taagctcagaaaaaatttattatggtgagaaagcttcactcttttcatgtttttttttttatgacacgtgacatgcacgtgttaccaattttgattattt |
7802629 |
T |
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| Q |
365 |
tgaaaacgacgtcgttttaagttttcacagtttctagtattat |
407 |
Q |
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| T |
7802630 |
tgaaaacgacgtcgttttaagttttcacagtttctagtattat |
7802672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 47 - 110
Target Start/End: Original strand, 7802310 - 7802373
Alignment:
| Q |
47 |
cctattcataaacccaaacatgaatattgaataccttaaaaaacacaaatcccccatttcttta |
110 |
Q |
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| T |
7802310 |
cctattcataaacccaaacatgaatattgaataccttaaaaaacacaaatcccccatttcttta |
7802373 |
T |
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