View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18848_low_5 (Length: 387)
Name: NF18848_low_5
Description: NF18848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18848_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 18 - 377
Target Start/End: Original strand, 8438821 - 8439174
Alignment:
| Q |
18 |
agagttagtttaaaaaaggatagagagaaagtcatcaagaatagacaatcctaacctaatttaaatatagtttaagtgagatatgaatgtgatgatcgga |
117 |
Q |
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| T |
8438821 |
agagttagtttaaagaaggatagagagaaagtcatcaaaaatagacaatcctaacctaatttaaatatagtttaagtgagatatgaatgtgatgatcaga |
8438920 |
T |
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| Q |
118 |
cataggggcaaacccctatttattttatttctaagttttgtgcaggttgtttctatcttttacttagataatcgtttcaagccaatgatattgtaaataa |
217 |
Q |
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| T |
8438921 |
cataggggcaaacccctatttattgtatttctaagttttgtgcaggttgtttctatcttt-acttagataatcgtttcaagccaatgatattgtaaataa |
8439019 |
T |
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| Q |
218 |
gcttaaggaattcacttctttcagctgggacccaatccattttaaaataattgtaaaagatgtgttaagtggtgattttatcactaataatagaaaagga |
317 |
Q |
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| T |
8439020 |
gcttaaggaattcacttctttcagctgggacccaatccattttaaaataattgtaaaagatttgttcagtggtgattttatcactaataatagaaaagga |
8439119 |
T |
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| Q |
318 |
aaataatgatattgcattgatcaaattaaataccttcctcatagaagacccggacctttg |
377 |
Q |
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| T |
8439120 |
aaataatgatattgcattgatc-----aaatacctttctcatagaagacccggacctttg |
8439174 |
T |
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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 261 - 343
Target Start/End: Complemental strand, 31947416 - 31947332
Alignment:
| Q |
261 |
aaaataattgtaaaagatgtgttaagtggtgattttatcactaataata--gaaaaggaaaataatgatattgcattgatcaaat |
343 |
Q |
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| T |
31947416 |
aaaatgattgtgaaagatatgttcaatggtgattttgtcactaataataatagaaaggaaaacaatgatattgcattgataaaat |
31947332 |
T |
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