View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18849_high_3 (Length: 390)

Name: NF18849_high_3
Description: NF18849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18849_high_3
NF18849_high_3
[»] chr2 (5 HSPs)
chr2 (14-279)||(38588149-38588426)
chr2 (51-175)||(38583479-38583602)
chr2 (63-175)||(8986927-8987038)
chr2 (63-175)||(8985574-8985685)
chr2 (73-175)||(32291155-32291256)
[»] chr5 (4 HSPs)
chr5 (209-306)||(42308836-42308933)
chr5 (74-175)||(11320486-11320585)
chr5 (72-128)||(24137644-24137700)
chr5 (74-102)||(28432261-28432289)
[»] chr7 (10 HSPs)
chr7 (63-164)||(6840606-6840706)
chr7 (63-175)||(46963064-46963175)
chr7 (98-176)||(6841471-6841548)
chr7 (63-176)||(2628243-2628355)
chr7 (74-175)||(15614261-15614361)
chr7 (74-175)||(46964429-46964529)
chr7 (73-137)||(44337384-44337448)
chr7 (61-136)||(21814465-21814539)
chr7 (16-112)||(26403509-26403604)
chr7 (120-173)||(17921256-17921308)
[»] chr4 (5 HSPs)
chr4 (63-175)||(16871651-16871762)
chr4 (72-175)||(16543360-16543462)
chr4 (67-136)||(37945522-37945591)
chr4 (79-153)||(16869528-16869601)
chr4 (72-125)||(24131825-24131878)
[»] chr1 (5 HSPs)
chr1 (63-176)||(6696014-6696126)
chr1 (74-175)||(15629358-15629458)
chr1 (78-153)||(15630161-15630235)
chr1 (74-136)||(28665018-28665079)
chr1 (73-178)||(2073375-2073482)
[»] chr6 (7 HSPs)
chr6 (72-147)||(22868489-22868563)
chr6 (72-136)||(9290663-9290727)
chr6 (73-175)||(18984497-18984598)
chr6 (74-175)||(10741772-10741871)
chr6 (63-134)||(18792843-18792914)
chr6 (94-176)||(21862688-21862769)
chr6 (72-174)||(33423986-33424087)
[»] chr3 (10 HSPs)
chr3 (72-175)||(42531289-42531391)
chr3 (63-175)||(814385-814498)
chr3 (72-175)||(46691458-46691559)
chr3 (72-175)||(50297460-50297562)
chr3 (82-178)||(814257-814351)
chr3 (74-136)||(50294694-50294756)
chr3 (80-176)||(42530589-42530683)
chr3 (61-136)||(16463005-16463079)
chr3 (63-169)||(30057091-30057196)
chr3 (74-136)||(18088145-18088206)
[»] chr8 (4 HSPs)
chr8 (87-175)||(43615458-43615545)
chr8 (73-137)||(20241062-20241126)
chr8 (73-137)||(20251941-20252005)
chr8 (72-153)||(33199431-33199512)
[»] scaffold0002 (1 HSPs)
scaffold0002 (74-176)||(406256-406357)
[»] scaffold0511 (1 HSPs)
scaffold0511 (63-134)||(11227-11298)


Alignment Details
Target: chr2 (Bit Score: 178; Significance: 7e-96; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 14 - 279
Target Start/End: Original strand, 38588149 - 38588426
Alignment:
Q  14 tagtttcaagaaagaataaagggactgctagaatttcaatagaatacaaaatagattgacattacaaaaggttataagaaaatatataataaaacctaac 113  Q
    ||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38588149 tagtttcaagaaagaataaagggacggttagaatttcaatagaatataaaatagattgacattacaaaaggttataagaaaatatataataaaacctaac 38588248  T
Q  114 gcactctaactta-------------ctgatataaaagacccaataacttaagtctaatattttcttatctaacaacttcatcatcccaatccatnnnnn 200  Q
      |||||||||||             || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  38588249 ctactctaacttattaatctaacttactaatataaaagacc-aataacttaagtctaatattttcttatctaacaacttcatcatcccaatccataaaaa 38588347  T
Q  201 nntgctgccttcctccatttttcagcttcttgtttcatccttttttgtttgctctttcttcttgcaagtgcaaccatcc 279  Q
      ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38588348 aatgctgccttcctcaatttttcagcttcttgtttcatccttttttgtttgctctttcttcttgcaagtgcaaccatcc 38588426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 51 - 175
Target Start/End: Original strand, 38583479 - 38583602
Alignment:
Q  51 aatagaatacaaaatagattgacattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaataactt 150  Q
    |||||||||||||||| ||||||||||||||||||||||||  |||||||||||||| ||||||   ||||||||||| |||| |||| |||||||| ||    
T  38583479 aatagaatacaaaataaattgacattacaaaaggttataagcgaatatataataaaatctaacgggttctaacttactaatat-aaaggcccaataattt 38583577  T
Q  151 aagtctaatattttcttatctaaca 175  Q
    ||| |||||||||| ||||||||||    
T  38583578 aagcctaatattttattatctaaca 38583602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 63 - 175
Target Start/End: Complemental strand, 8987038 - 8986927
Alignment:
Q  63 aatagattgacattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaataacttaagtctaatatt 162  Q
    ||||| || ||||||||||||||||||||| ||||||||||||||  ||| | ||||||||||||| ||||||| | |||||||||||||| |||||| |    
T  8987038 aatagcttaacattacaaaaggttataagagaatatataataaaatttaatggactctaacttactaatataaatg-cccaataacttaagcctaatact 8986940  T
Q  163 ttcttatctaaca 175  Q
    || ||||||||||    
T  8986939 ttattatctaaca 8986927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 63 - 175
Target Start/End: Complemental strand, 8985685 - 8985574
Alignment:
Q  63 aatagattgacattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaataacttaagtctaatatt 162  Q
    ||||| || ||||||||||||||||||||| |||||||||||||| |||| | ||| ||||||||| ||||||| |  ||||||||||||| |||||| |    
T  8985685 aatagcttaacattacaaaaggttataagagaatatataataaaatctaatggactttaacttactaatataaatg-tccaataacttaagcctaatact 8985587  T
Q  163 ttcttatctaaca 175  Q
    || ||||||||||    
T  8985586 ttattatctaaca 8985574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 73 - 175
Target Start/End: Complemental strand, 32291256 - 32291155
Alignment:
Q  73 cattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaataacttaagtctaatattttcttatcta 172  Q
    |||||||||||||||||||| ||||||||||||| | ||| | ||||||||||||| |||| |||||| ||||||||||||   |||| ||| |||||||    
T  32291256 cattacaaaaggttataagagaatatataataaatcttaatggactctaacttactaatat-aaagacacaataacttaagctcaatactttattatcta 32291158  T
Q  173 aca 175  Q
    |||    
T  32291157 aca 32291155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 209 - 306
Target Start/End: Original strand, 42308836 - 42308933
Alignment:
Q  209 cttcctccatttttcagcttcttgtttcatccttttttgtttgctctttcttcttgcaagtgcaaccatcctatgccactagaaaggtaagtgctaaa 306  Q
    |||||||||| ||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||| | ||||||||| |||||||    
T  42308836 cttcctccatatttcagcttcttgtttcattctcttttgtttgctttttcttcttgcaagtgcaaccatcctatgccattggaaaggtaaatgctaaa 42308933  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 74 - 175
Target Start/End: Original strand, 11320486 - 11320585
Alignment:
Q  74 attacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaataacttaagtctaatattttcttatctaa 173  Q
    ||||||||||||||||||| ||||||||||||||  ||| | |||| |||||||| |||| ||||| ||||||||||||||||||||  || ||||||||    
T  11320486 attacaaaaggttataagagaatatataataaaa-ttaatggactccaacttactaatat-aaagagccaataacttaagtctaatacattattatctaa 11320583  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 72 - 128
Target Start/End: Complemental strand, 24137700 - 24137644
Alignment:
Q  72 acattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttact 128  Q
    |||||||| |||||||||||| |||||||||||||||||||   |||||||||||||    
T  24137700 acattacagaaggttataagagaatatataataaaacctaatagactctaacttact 24137644  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 102
Target Start/End: Original strand, 28432261 - 28432289
Alignment:
Q  74 attacaaaaggttataagaaaatatataa 102  Q
    |||||||||||||||||||||||||||||    
T  28432261 attacaaaaggttataagaaaatatataa 28432289  T

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Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 63 - 164
Target Start/End: Original strand, 6840606 - 6840706
Alignment:
Q  63 aatagattgacattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaataacttaagtctaatatt 162  Q
    ||||| || ||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||  |||||    
T  6840606 aatagctttacattacaaaaggttataaaagaatatataataaaacctaacggactctaacttactgatat-aaaggcccaataacttaagtccgatatt 6840704  T
Q  163 tt 164  Q
    ||    
T  6840705 tt 6840706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 63 - 175
Target Start/End: Original strand, 46963064 - 46963175
Alignment:
Q  63 aatagattgacattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaataacttaagtctaatatt 162  Q
    ||||| || ||||||||||||||||||||| ||||| |||||||| |||| | ||||||||||||| ||||||| | |||||||||||||| |||||| |    
T  46963064 aatagcttaacattacaaaaggttataagagaatatctaataaaatctaatggactctaacttactaatataaatg-cccaataacttaagcctaatact 46963162  T
Q  163 ttcttatctaaca 175  Q
    || ||||||||||    
T  46963163 ttattatctaaca 46963175  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 98 - 176
Target Start/End: Original strand, 6841471 - 6841548
Alignment:
Q  98 tataataaaacctaacgcactctaacttactgatataaaagacccaataacttaagtctaatattttcttatctaacaa 176  Q
    |||||||||| |||||| |||||||||||||||||| |||| ||||||||||||||||  ||||||| |||||||||||    
T  6841471 tataataaaatctaacggactctaacttactgatat-aaaggcccaataacttaagtccgatattttattatctaacaa 6841548  T

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Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 63 - 176
Target Start/End: Original strand, 2628243 - 2628355
Alignment:
Q  63 aatagattgacattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaataacttaagtctaatatt 162  Q
    ||||| || |||||||||||  |||| ||| ||||||||||||||||||| | ||||||||||||| |||| |||||| ||||||||||||   |||| |    
T  2628243 aatagtttaacattacaaaaaattatgagagaatatataataaaacctaatggactctaacttactaatat-aaagactcaataacttaagctcaatact 2628341  T
Q  163 ttcttatctaacaa 176  Q
    || |||||||||||    
T  2628342 ttattatctaacaa 2628355  T

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Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 74 - 175
Target Start/End: Original strand, 15614261 - 15614361
Alignment:
Q  74 attacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaataacttaagtctaatattttcttatctaa 173  Q
    ||||||||||||||||| | ||||||||||||||||||| | |||||||||| || |||| ||||  ||||||||||||| | |||| ||| ||||||||    
T  15614261 attacaaaaggttataaaagaatatataataaaacctaatggactctaacttgctaatat-aaaggtccaataacttaagcccaatactttattatctaa 15614359  T
Q  174 ca 175  Q
    ||    
T  15614360 ca 15614361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 74 - 175
Target Start/End: Original strand, 46964429 - 46964529
Alignment:
Q  74 attacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaataacttaagtctaatattttcttatctaa 173  Q
    ||||||||| ||||||||| |||||||||||||| |||| | |||||||| |||| ||||||| | |||||||||||||| |||||  ||| ||||||||    
T  46964429 attacaaaaagttataagagaatatataataaaatctaatggactctaacgtactaatataaatg-cccaataacttaagcctaatcctttattatctaa 46964527  T
Q  174 ca 175  Q
    ||    
T  46964528 ca 46964529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 73 - 137
Target Start/End: Complemental strand, 44337448 - 44337384
Alignment:
Q  73 cattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaa 137  Q
    |||||| ||| ||||||||| |||||||||||||| |||||| |||||||||||||  |||||||    
T  44337448 cattactaaatgttataagagaatatataataaaatctaacggactctaacttactactataaaa 44337384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 61 - 136
Target Start/End: Complemental strand, 21814539 - 21814465
Alignment:
Q  61 aaaatagattgacattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaa 136  Q
    |||||||||| ||||||||||||  ||| ||| |||||||||| |||||||| | ||||||||||||| |||||||    
T  21814539 aaaatagattaacattacaaaagaatattagagaatatataat-aaacctaatggactctaacttactaatataaa 21814465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 26403604 - 26403509
Alignment:
Q  16 gtttcaagaaagaataaagggactgctagaatttcaatagaatacaaaatagattgacattacaaaaggttataagaaaatatataataaaacctaa 112  Q
    ||||||| | |||| |||| |||  |||| |||||||||||||| | |||||  | ||||||||||| ||||||||| |||||||||||||| ||||    
T  26403604 gtttcaatatagaacaaagagacgactaggatttcaatagaata-acaatagcataacattacaaaaagttataagagaatatataataaaatctaa 26403509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 173
Target Start/End: Original strand, 17921256 - 17921308
Alignment:
Q  120 taacttactgatataaaagacccaataacttaagtctaatattttcttatctaa 173  Q
    ||||||||| ||||||| ||| ||||||||||||||||||| ||| ||||||||    
T  17921256 taacttactaatataaa-gacacaataacttaagtctaatactttattatctaa 17921308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 63 - 175
Target Start/End: Complemental strand, 16871762 - 16871651
Alignment:
Q  63 aatagattgacattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaataacttaagtctaatatt 162  Q
    ||||| || ||||||||||||||||||||| |||||||||||||| |||| | ||||||||||||| ||||||| | |||||||||||||| |||||| |    
T  16871762 aatagcttaacattacaaaaggttataagataatatataataaaatctaatggactctaacttactaatataaatg-cccaataacttaagcctaatact 16871664  T
Q  163 ttcttatctaaca 175  Q
    || ||||||||||    
T  16871663 ttattatctaaca 16871651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 72 - 175
Target Start/End: Complemental strand, 16543462 - 16543360
Alignment:
Q  72 acattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaataacttaagtctaatattttcttatct 171  Q
    ||||| |||||||||| | || ||||||||||||||| ||| | ||||||||||||| |||||||||  ||||||||||||||| | || ||| ||||||    
T  16543462 acattgcaaaaggttacatgagaatatataataaaacttaatgaactctaacttactaatataaaag-gccaataacttaagtccattactttattatct 16543364  T
Q  172 aaca 175  Q
    ||||    
T  16543363 aaca 16543360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 67 - 136
Target Start/End: Complemental strand, 37945591 - 37945522
Alignment:
Q  67 gattgacattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaa 136  Q
    |||| ||||||||||||||||||||| ||||||||||||||  ||| | ||||||||||||| |||||||    
T  37945591 gattaacattacaaaaggttataagagaatatataataaaatttaatggactctaacttactaatataaa 37945522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 79 - 153
Target Start/End: Complemental strand, 16869601 - 16869528
Alignment:
Q  79 aaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaataacttaag 153  Q
    |||| ||||||||| | |||||||||||| |||| | ||||||||||||| ||||||||| ||||||||||||||    
T  16869601 aaaaagttataagagagtatataataaaatctaatgaactctaacttactaatataaaag-cccaataacttaag 16869528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 24131878 - 24131825
Alignment:
Q  72 acattacaaaaggttataagaaaatatataataaaacctaacgcactctaactt 125  Q
    ||||||||||| ||||||||| || |||||||||||||||| | ||||||||||    
T  24131878 acattacaaaatgttataagagaacatataataaaacctaatggactctaactt 24131825  T

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Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 63 - 176
Target Start/End: Complemental strand, 6696126 - 6696014
Alignment:
Q  63 aatagattgacattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaataacttaagtctaatatt 162  Q
    ||||| || ||||||||||||||||||||| ||||| |||||||| |||| | ||||||||||||| ||||||| | |||||||||||||| |||||| |    
T  6696126 aatagcttaacattacaaaaggttataagagaatatttaataaaatctaatggactctaacttactaatataaatg-cccaataacttaagcctaatact 6696028  T
Q  163 ttcttatctaacaa 176  Q
    || |||||||||||    
T  6696027 ttattatctaacaa 6696014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 74 - 175
Target Start/End: Original strand, 15629358 - 15629458
Alignment:
Q  74 attacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaataacttaagtctaatattttcttatctaa 173  Q
    ||||||||||||||||||| |||||||||||||| |||| | ||||||||||||| |||| ||||  ||||||||||||| | |||||||| ||||||||    
T  15629358 attacaaaaggttataagagaatatataataaaatctaatgaactctaacttactaatat-aaaggtccaataacttaagcccaatattttattatctaa 15629456  T
Q  174 ca 175  Q
    ||    
T  15629457 ca 15629458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 153
Target Start/End: Original strand, 15630161 - 15630235
Alignment:
Q  78 caaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaataacttaag 153  Q
    ||||||||||||||| |||||||||||||||||||   ||||||||||||| |||| |||| |||||||| |||||    
T  15630161 caaaaggttataagagaatatataataaaacctaatagactctaacttactaatat-aaaggcccaataatttaag 15630235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 136
Target Start/End: Complemental strand, 28665079 - 28665018
Alignment:
Q  74 attacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaa 136  Q
    ||||||||| ||||| ||| |||||||||| |||||||| | ||||||||||||| |||||||    
T  28665079 attacaaaatgttatgagagaatatataat-aaacctaatggactctaacttactaatataaa 28665018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 178
Target Start/End: Original strand, 2073375 - 2073482
Alignment:
Q  73 cattacaaaaggttataagaaaatatataa--taaaacctaacgcact-ctaacttactgatataaaagacccaataacttaagtctaatattttcttat 169  Q
    |||||||||| ||||||||| ||||||||   |||||||||| | ||| |||||||||| |||| || |||  |||| |||||| | |||||||| ||||    
T  2073375 cattacaaaaagttataagagaatatatatactaaaacctaatggactgctaacttactaatattaaggact-aatagcttaagcccaatattttattat 2073473  T
Q  170 ctaacaact 178  Q
    |||||||||    
T  2073474 ctaacaact 2073482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 72 - 147
Target Start/End: Complemental strand, 22868563 - 22868489
Alignment:
Q  72 acattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaataa 147  Q
    ||||||||||| ||||||||| ||||||||||||||||||| | ||||||||||||| ||||||||| ||||||||    
T  22868563 acattacaaaaagttataagagaatatataataaaacctaatggactctaacttactaatataaaag-cccaataa 22868489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 72 - 136
Target Start/End: Original strand, 9290663 - 9290727
Alignment:
Q  72 acattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaa 136  Q
    ||||||||||||||||||||| ||||||||||||||||||| | ||||||||||| | |||||||    
T  9290663 acattacaaaaggttataagagaatatataataaaacctaatggactctaacttattaatataaa 9290727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 73 - 175
Target Start/End: Complemental strand, 18984598 - 18984497
Alignment:
Q  73 cattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaataacttaagtctaatattttcttatcta 172  Q
    |||||| ||||||||||||| ||||||||||||||| ||| | ||||||||||||| |||| |||| ||||||||  |||| | |||||||| |||| ||    
T  18984598 cattactaaaggttataagagaatatataataaaacataatgtactctaacttactaatat-aaaggcccaataatctaagcccaatattttattattta 18984500  T
Q  173 aca 175  Q
    |||    
T  18984499 aca 18984497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 74 - 175
Target Start/End: Complemental strand, 10741871 - 10741772
Alignment:
Q  74 attacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaataacttaagtctaatattttcttatctaa 173  Q
    ||||||||| ||||| ||| ||||||||||||| | ||| | |||||||||| || ||||||| |||||||||||||||| | |||||||| ||||||||    
T  10741871 attacaaaatgttatgagagaatatataataaatc-taatggactctaactttctaatataaa-gacccaataacttaagcccaatattttattatctaa 10741774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 134
Target Start/End: Original strand, 18792843 - 18792914
Alignment:
Q  63 aatagattgacattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatata 134  Q
    ||||| || ||||||||||||||||||||| |||||| |||||||| ||| ||||| ||||||||| |||||    
T  18792843 aatagtttaacattacaaaaggttataagagaatatacaataaaacttaatgcactttaacttactaatata 18792914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 94 - 176
Target Start/End: Complemental strand, 21862769 - 21862688
Alignment:
Q  94 aatatataataaaacctaacgcactctaacttactgatataaaagacccaataacttaagtctaatattttcttatctaacaa 176  Q
    ||||||||||||||||||| |||||||||||| || |||| |||||||||||| ||||||   |||| ||| |||||||||||    
T  21862769 aatatataataaaacctaatgcactctaacttgctaatat-aaagacccaatagcttaagctcaatactttattatctaacaa 21862688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 72 - 174
Target Start/End: Original strand, 33423986 - 33424087
Alignment:
Q  72 acattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaataacttaagtctaatattttcttatct 171  Q
    |||||||||| ||||||  || ||||||||||||||||||| | ||| ||||||||| |||| |||||| ||||||||||||   |||| ||| ||||||    
T  33423986 acattacaaagggttatgggagaatatataataaaacctaatgaactttaacttactaatat-aaagacgcaataacttaagctcaatactttattatct 33424084  T
Q  172 aac 174  Q
    |||    
T  33424085 aac 33424087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 72 - 175
Target Start/End: Complemental strand, 42531391 - 42531289
Alignment:
Q  72 acattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaataacttaagtctaatattttcttatct 171  Q
    ||||||||||||||||||||| ||||||||||||||||||| | ||| ||||||||| |||||||||  ||||||||| ||| | |||  ||| ||||||    
T  42531391 acattacaaaaggttataagagaatatataataaaacctaatgaactttaacttactaatataaaag-tccaataactcaagcccaatcctttattatct 42531293  T
Q  172 aaca 175  Q
    ||||    
T  42531292 aaca 42531289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 63 - 175
Target Start/End: Original strand, 814385 - 814498
Alignment:
Q  63 aatagattgacattacaaaaggttataagaaaatatataata--aaacctaacgcactctaacttactgatataaaagacccaataacttaagtctaata 160  Q
    ||||| || ||||||||| ||||||||||| ||||||||  |  |||||||| | ||||||||||||| ||||||| | |||||||||||||||| ||||    
T  814385 aatagcttaacattacaagaggttataagagaatatatataacgaaacctaatggactctaacttactaatataaatg-cccaataacttaagtccaata 814483  T
Q  161 ttttcttatctaaca 175  Q
     ||| ||||||||||    
T  814484 ctttattatctaaca 814498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 72 - 175
Target Start/End: Original strand, 46691458 - 46691559
Alignment:
Q  72 acattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaataacttaagtctaatattttcttatct 171  Q
    ||||||||||||||||||||| |||||||||||||| |||| | |||||||||||||  ||| ||||  ||||||||||||||  |||| ||| ||||||    
T  46691458 acattacaaaaggttataagagaatatataataaaa-ctaatggactctaacttactagtat-aaaggtccaataacttaagttcaatactttattatct 46691555  T
Q  172 aaca 175  Q
    ||||    
T  46691556 aaca 46691559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 72 - 175
Target Start/End: Complemental strand, 50297562 - 50297460
Alignment:
Q  72 acattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaataacttaagtctaatattttcttatct 171  Q
    ||||||||||||||||||||  || |||||||||||| ||| | ||||||||||||| |||| |||||| ||||||||||||   |||| ||| ||||||    
T  50297562 acattacaaaaggttataagtgaacatataataaaacataatgaactctaacttactaatat-aaagactcaataacttaagcacaatactttattatct 50297464  T
Q  172 aaca 175  Q
    ||||    
T  50297463 aaca 50297460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 82 - 178
Target Start/End: Complemental strand, 814351 - 814257
Alignment:
Q  82 aggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaataacttaagtctaatattttcttatctaacaact 178  Q
    ||||||||||| |||||| ||  |||||||| | ||||||||||||| ||||||| | |||||||||||||||| |||| ||| |||||||||||||    
T  814351 aggttataagagaatata-aacgaaacctaatggactctaacttactaatataaatg-cccaataacttaagtccaatactttattatctaacaact 814257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 74 - 136
Target Start/End: Complemental strand, 50294756 - 50294694
Alignment:
Q  74 attacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaa 136  Q
    ||||||||| ||||||||| ||||||||||||||||||| | ||||||||||| | |||||||    
T  50294756 attacaaaatgttataagataatatataataaaacctaatggactctaacttattaatataaa 50294694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 176
Target Start/End: Complemental strand, 42530683 - 42530589
Alignment:
Q  80 aaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaataacttaagtctaatattttcttatctaacaa 176  Q
    ||||||||||||| ||||||||||||||||||| | ||| ||| ||||| |||||||||   || ||||| ||||| |||| ||| |||||||||||    
T  42530683 aaaggttataagagaatatataataaaacctaatgaactttaatttactaatataaaag--tcactaactcaagtccaatactttattatctaacaa 42530589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 61 - 136
Target Start/End: Complemental strand, 16463079 - 16463005
Alignment:
Q  61 aaaatagattgacattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaa 136  Q
    |||||||||| ||||||||||||  ||| ||| |||||||||| |||||||| | ||||||||||||| |||||||    
T  16463079 aaaatagattaacattacaaaagaatattagagaatatataat-aaacctaatggactctaacttactaatataaa 16463005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 169
Target Start/End: Complemental strand, 30057196 - 30057091
Alignment:
Q  63 aatagattgacattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaataacttaagtctaatatt 162  Q
    ||||| || |||||||||||| |||||||| ||||||||| |||| |||| | |||||||||||   ||||||| | ||||||||||| ||| ||||| |    
T  30057196 aatagcttaacattacaaaagattataagagaatatataacaaaatctaatggactctaacttatgaatataaatg-cccaataacttgagtttaatact 30057098  T
Q  163 ttcttat 169  Q
    || ||||    
T  30057097 ttattat 30057091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 136
Target Start/End: Original strand, 18088145 - 18088206
Alignment:
Q  74 attacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaa 136  Q
    ||||||||| ||||| ||| |||||||||| |||||||| | ||||||||||||| |||||||    
T  18088145 attacaaaatgttatgagagaatatataat-aaacctaatggactctaacttactaatataaa 18088206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 87 - 175
Target Start/End: Complemental strand, 43615545 - 43615458
Alignment:
Q  87 ataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaataacttaagtctaatattttcttatctaaca 175  Q
    ||||||||||||||||||||| |||| | ||||||||||||| ||||||||| | |||||||| ||||  |||||||| ||||||||||    
T  43615545 ataagaaaatatataataaaatctaatggactctaacttactaatataaaag-ctcaataactaaagttcaatattttattatctaaca 43615458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 73 - 137
Target Start/End: Complemental strand, 20241126 - 20241062
Alignment:
Q  73 cattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaa 137  Q
    |||||| ||| ||||||||| |||||||||||||| |||||| |||||||||||||  |||||||    
T  20241126 cattactaaatgttataagagaatatataataaaatctaacggactctaacttactactataaaa 20241062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 73 - 137
Target Start/End: Original strand, 20251941 - 20252005
Alignment:
Q  73 cattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaa 137  Q
    |||||| ||| ||||||||| |||||||||||||| |||||| |||||||||||||  |||||||    
T  20251941 cattactaaatgttataagagaatatataataaaatctaacggactctaacttactactataaaa 20252005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 153
Target Start/End: Complemental strand, 33199512 - 33199431
Alignment:
Q  72 acattacaaaaggttataagaaaatatataataaaacctaa-cgcactctaacttactgatataaaagacccaataacttaag 153  Q
    |||||||||||| ||||||| ||||||||||||||||||||    ||||| ||||||| ||||||||| | ||||||||||||    
T  33199512 acattacaaaagattataaggaaatatataataaaacctaattatactctgacttactaatataaaag-ctcaataacttaag 33199431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 74 - 176
Target Start/End: Original strand, 406256 - 406357
Alignment:
Q  74 attacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatataaaagacccaataacttaagtctaatattttcttatctaa 173  Q
    |||| |||||||||||| | ||||||||||||||| ||| | |||||||||| || |||| |||| |||||||||||||  |||||| ||| ||||||||    
T  406256 attagaaaaggttataatagaatatataataaaacttaaaggactctaacttgctaatat-aaaggcccaataacttaaacctaatactttattatctaa 406354  T
Q  174 caa 176  Q
    |||    
T  406355 caa 406357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0511 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 134
Target Start/End: Complemental strand, 11298 - 11227
Alignment:
Q  63 aatagattgacattacaaaaggttataagaaaatatataataaaacctaacgcactctaacttactgatata 134  Q
    ||||| || ||||||||||||||||||||| |||||| |||||||| ||| ||||| ||||||||| |||||    
T  11298 aatagtttaacattacaaaaggttataagagaatatacaataaaacttaatgcactttaacttactaatata 11227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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