View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18849_low_12 (Length: 251)

Name: NF18849_low_12
Description: NF18849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18849_low_12
NF18849_low_12
[»] chr8 (14 HSPs)
chr8 (8-144)||(41722059-41722195)
chr8 (73-142)||(14999169-14999238)
chr8 (73-142)||(41403994-41404063)
chr8 (75-142)||(16324844-16324911)
chr8 (75-142)||(43801705-43801772)
chr8 (70-142)||(15009092-15009164)
chr8 (75-142)||(6911029-6911096)
chr8 (75-142)||(16325080-16325147)
chr8 (75-142)||(43801470-43801537)
chr8 (76-142)||(41403760-41403826)
chr8 (75-142)||(8489373-8489440)
chr8 (83-142)||(22781063-22781122)
chr8 (108-142)||(6911263-6911297)
chr8 (74-142)||(9133899-9133968)
[»] chr2 (13 HSPs)
chr2 (75-142)||(29893031-29893098)
chr2 (74-142)||(4371453-4371521)
chr2 (75-142)||(22563210-22563277)
chr2 (75-142)||(21265563-21265630)
chr2 (91-142)||(12232579-12232630)
chr2 (75-142)||(21265796-21265863)
chr2 (75-142)||(22563444-22563511)
chr2 (75-142)||(17200078-17200145)
chr2 (73-142)||(34645780-34645849)
chr2 (75-142)||(34645547-34645614)
chr2 (91-127)||(33491417-33491453)
chr2 (73-112)||(33491327-33491366)
chr2 (76-142)||(4682757-4682823)
[»] chr7 (9 HSPs)
chr7 (74-142)||(35207177-35207245)
chr7 (74-142)||(25048258-25048326)
chr7 (75-142)||(19318453-19318520)
chr7 (75-142)||(35207409-35207476)
chr7 (73-142)||(39983871-39983940)
chr7 (75-142)||(19318382-19318449)
chr7 (91-142)||(29474646-29474697)
chr7 (75-142)||(2834433-2834500)
chr7 (75-142)||(35363318-35363385)
[»] chr1 (12 HSPs)
chr1 (74-142)||(24883202-24883270)
chr1 (75-139)||(24882971-24883035)
chr1 (76-142)||(27171800-27171866)
chr1 (77-142)||(34969987-34970052)
chr1 (82-142)||(49777057-49777117)
chr1 (75-142)||(3385308-3385375)
chr1 (75-142)||(3385545-3385612)
chr1 (75-142)||(49776819-49776886)
chr1 (76-142)||(33401090-33401156)
chr1 (91-142)||(33156688-33156739)
chr1 (75-142)||(34622559-34622626)
chr1 (78-142)||(39781073-39781137)
[»] chr5 (10 HSPs)
chr5 (66-142)||(31193956-31194032)
chr5 (75-142)||(31194199-31194266)
chr5 (73-142)||(36955301-36955370)
chr5 (74-142)||(14076903-14076971)
chr5 (75-142)||(17370067-17370134)
chr5 (91-142)||(36955528-36955579)
chr5 (75-142)||(8754658-8754725)
chr5 (101-142)||(43449493-43449534)
chr5 (91-142)||(32347131-32347182)
chr5 (108-142)||(42546583-42546617)
[»] chr4 (16 HSPs)
chr4 (75-142)||(50544256-50544323)
chr4 (75-142)||(54316063-54316130)
chr4 (75-142)||(7061972-7062039)
chr4 (91-139)||(42475892-42475940)
chr4 (80-142)||(46993072-46993134)
chr4 (73-140)||(9551461-9551528)
chr4 (75-142)||(11789859-11789926)
chr4 (75-142)||(17914982-17915049)
chr4 (75-140)||(24673957-24674022)
chr4 (78-142)||(23655302-23655366)
chr4 (103-142)||(5466083-5466122)
chr4 (91-134)||(21785940-21785983)
chr4 (91-144)||(3556382-3556435)
chr4 (77-142)||(5465855-5465920)
chr4 (102-142)||(8538361-8538401)
chr4 (103-142)||(51959733-51959773)
[»] chr3 (13 HSPs)
chr3 (75-142)||(8799317-8799384)
chr3 (75-142)||(38499819-38499886)
chr3 (76-142)||(4041417-4041483)
chr3 (74-142)||(38500055-38500123)
chr3 (80-142)||(53197217-53197279)
chr3 (82-142)||(43797586-43797646)
chr3 (91-142)||(43797368-43797419)
chr3 (74-142)||(53196987-53197055)
chr3 (103-142)||(46883646-46883685)
chr3 (100-142)||(25349944-25349986)
chr3 (76-142)||(43797875-43797941)
chr3 (75-112)||(29828685-29828722)
chr3 (74-142)||(48346213-48346281)
[»] chr6 (3 HSPs)
chr6 (73-142)||(22748586-22748655)
chr6 (70-142)||(16125517-16125589)
chr6 (101-142)||(24197709-24197750)


Alignment Details
Target: chr8 (Bit Score: 113; Significance: 3e-57; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 8 - 144
Target Start/End: Complemental strand, 41722195 - 41722059
Alignment:
Q  8 tgtaacagagctatctatttctttgttatctgcattctaccctttcaattttgagggtggggttgaggagttcgggtatgtttcatttaggctaagctca 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||     
T  41722195 tgtaacagagctatctatttctttgttatctgcattctaccctttcaattttaatggtggggttgaggagttcgggtatgtttcatttaggctaagctct 41722096  T
Q  108 atttactctatttagggtttggatgcaagacatgttg 144  Q
    ||||||| ||||||| | |||||||||||||||||||    
T  41722095 atttactttatttagagcttggatgcaagacatgttg 41722059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 73 - 142
Target Start/End: Original strand, 14999169 - 14999238
Alignment:
Q  73 aggagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    |||||||||| |||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14999169 aggagttcggatatgctccatttaggctaagctcaatttactccatttagggtttggatgcaagacatgt 14999238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 73 - 142
Target Start/End: Complemental strand, 41404063 - 41403994
Alignment:
Q  73 aggagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    ||||||| ||||||| | |||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  41404063 aggagtttgggtatgctccatttaggttaagttcaatttactctatttagggtttggatgcaagacatgt 41403994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 75 - 142
Target Start/End: Original strand, 16324844 - 16324911
Alignment:
Q  75 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    ||||||||| ||| | |||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  16324844 gagttcgggcatgctccatttaggctaagctcaatttaatccatttagggtttggatgcaagacatgt 16324911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 75 - 142
Target Start/End: Complemental strand, 43801772 - 43801705
Alignment:
Q  75 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    ||||||||||||||| |||||||||||||||| |||||||| |||||| |||||||||||||| ||||    
T  43801772 gagttcgggtatgttccatttaggctaagctccatttactccatttagagtttggatgcaagatatgt 43801705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 70 - 142
Target Start/End: Complemental strand, 15009164 - 15009092
Alignment:
Q  70 ttgaggagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    |||| ||||||||||||| | |||||||||||||||  |||||||| |||||||||||||||| |||||||||    
T  15009164 ttgatgagttcgggtatgctccatttaggctaagcttcatttactccatttagggtttggatgtaagacatgt 15009092  T

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Target: chr8; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 75 - 142
Target Start/End: Original strand, 6911029 - 6911096
Alignment:
Q  75 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    |||||| |||||| | |||||||||||||||| |||||||| |||||||||||||||| |||||||||    
T  6911029 gagttcaggtatgctccatttaggctaagctccatttactccatttagggtttggatgtaagacatgt 6911096  T

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Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 75 - 142
Target Start/End: Complemental strand, 16325147 - 16325080
Alignment:
Q  75 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    ||||||| ||||| |||||||| || || ||| |||||||| ||||||||||||||||||||||||||    
T  16325147 gagttcgagtatgcttcatttaagccaaactccatttactccatttagggtttggatgcaagacatgt 16325080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 75 - 142
Target Start/End: Original strand, 43801470 - 43801537
Alignment:
Q  75 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    ||||||||||||| |||||||||||||| ||  |||||||| |||||| ||||||||| |||||||||    
T  43801470 gagttcgggtatgcttcatttaggctaaacttcatttactccatttagagtttggatgtaagacatgt 43801537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 76 - 142
Target Start/End: Original strand, 41403760 - 41403826
Alignment:
Q  76 agttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    |||||||||||| |||||||||  |||||||||||||||| ||||||| ||| |||| |||| ||||    
T  41403760 agttcgggtatgcttcatttagattaagctcaatttactccatttaggattttgatgtaagatatgt 41403826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 142
Target Start/End: Original strand, 8489373 - 8489440
Alignment:
Q  75 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    ||||| ||||||| | |||||||| ||||||  ||||| || |||||||||||||||| |||||||||    
T  8489373 gagtttgggtatgctccatttaggttaagcttcatttattccatttagggtttggatgtaagacatgt 8489440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 142
Target Start/End: Original strand, 22781063 - 22781122
Alignment:
Q  83 gtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    |||||||| ||||||||||| ||  |||||||| ||| |||||||||||||||| |||||    
T  22781063 gtatgttttatttaggctaaacttcatttactccattcagggtttggatgcaaggcatgt 22781122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 142
Target Start/End: Complemental strand, 6911297 - 6911263
Alignment:
Q  108 atttactctatttagggtttggatgcaagacatgt 142  Q
    |||||||| ||||||||||||||||||||||||||    
T  6911297 atttactccatttagggtttggatgcaagacatgt 6911263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 142
Target Start/End: Original strand, 9133899 - 9133968
Alignment:
Q  74 ggagttcgggtatgtttcatttaggctaagctcaatttactctatttaggg-tttggatgcaagacatgt 142  Q
    |||||| ||||||| |  |||||||  ||||||||||||||| |||||||| |||||||||| |||||||    
T  9133899 ggagtttgggtatgctctatttaggtaaagctcaatttactccatttagggatttggatgcatgacatgt 9133968  T

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Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 75 - 142
Target Start/End: Complemental strand, 29893098 - 29893031
Alignment:
Q  75 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    ||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  29893098 gagttcgggtatgctccatttaggctaagctctatttactctatttagggtttggatgcaagacatgt 29893031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 74 - 142
Target Start/End: Original strand, 4371453 - 4371521
Alignment:
Q  74 ggagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    |||||||||||||| | |||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  4371453 ggagttcgggtatgctccatttaggctaagctccatttactccatttagggtttggatgcaagacatgt 4371521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 75 - 142
Target Start/End: Original strand, 22563210 - 22563277
Alignment:
Q  75 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    ||||||||||||| | |||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  22563210 gagttcgggtatgctccatttaggctaagctccatttactccatttagggtttggatgcaagacatgt 22563277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 75 - 142
Target Start/End: Original strand, 21265563 - 21265630
Alignment:
Q  75 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    ||||| ||||||| | ||||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  21265563 gagttagggtatgctccatttagactaagctcaatttactccatttagggtttggatgcaagacatgt 21265630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 91 - 142
Target Start/End: Original strand, 12232579 - 12232630
Alignment:
Q  91 catttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  12232579 catttaggctaagctccatttactctatttagggtttggatgtaagacatgt 12232630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 75 - 142
Target Start/End: Complemental strand, 21265863 - 21265796
Alignment:
Q  75 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    ||||||| ||||| |  ||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  21265863 gagttcgagtatgctctatttaagctaagctccatttactctatttagggtttggatgcaagacatgt 21265796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 75 - 142
Target Start/End: Complemental strand, 22563511 - 22563444
Alignment:
Q  75 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    ||||||||||||| | |||||||||||| ||| |||||||| ||||||| ||||||||||||||||||    
T  22563511 gagttcgggtatgctccatttaggctaaactccatttactccatttaggatttggatgcaagacatgt 22563444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 75 - 142
Target Start/End: Original strand, 17200078 - 17200145
Alignment:
Q  75 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    ||||||||||||| | ||||||||| |||||| |||||||| ||||||| |||||||| |||||||||    
T  17200078 gagttcgggtatgctccatttaggcaaagctccatttactccatttaggatttggatgtaagacatgt 17200145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 142
Target Start/End: Complemental strand, 34645849 - 34645780
Alignment:
Q  73 aggagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    |||||||||||||| || |||||||||| | ||| ||||| || |||||||||||||||| |||||||||    
T  34645849 aggagttcgggtatattccatttaggcttaactccatttattccatttagggtttggatgtaagacatgt 34645780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 142
Target Start/End: Original strand, 34645547 - 34645614
Alignment:
Q  75 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    ||||||||||||| |  ||||||| |||| || |||||||| ||||||||| ||||||||||||||||    
T  34645547 gagttcgggtatgctctatttaggttaagttctatttactccatttagggtatggatgcaagacatgt 34645614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 127
Target Start/End: Complemental strand, 33491453 - 33491417
Alignment:
Q  91 catttaggctaagctcaatttactctatttagggttt 127  Q
    |||||||||||||||| ||||||||||||||||||||    
T  33491453 catttaggctaagctccatttactctatttagggttt 33491417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 112
Target Start/End: Original strand, 33491327 - 33491366
Alignment:
Q  73 aggagttcgggtatgtttcatttaggctaagctcaattta 112  Q
    ||||||||||||||||| |||||||||||||||| |||||    
T  33491327 aggagttcgggtatgttccatttaggctaagctccattta 33491366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 142
Target Start/End: Original strand, 4682757 - 4682823
Alignment:
Q  76 agttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    |||||||||||||| ||||||   ||||||  |||||||| |||||| |||| ||||||||||||||    
T  4682757 agttcgggtatgttccatttaatttaagcttcatttactccatttagagtttagatgcaagacatgt 4682823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 74 - 142
Target Start/End: Original strand, 35207177 - 35207245
Alignment:
Q  74 ggagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    ||||||||||||| || |||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  35207177 ggagttcgggtatattccatttaggctaagctccatttactccatttagggtttggatgcaagacatgt 35207245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 74 - 142
Target Start/End: Complemental strand, 25048326 - 25048258
Alignment:
Q  74 ggagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    |||||||||||||| | |||||||||||||||| |||||||  ||||||| ||||||||||||||||||    
T  25048326 ggagttcgggtatgctccatttaggctaagctccatttacttcatttaggatttggatgcaagacatgt 25048258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 75 - 142
Target Start/End: Complemental strand, 19318520 - 19318453
Alignment:
Q  75 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    ||||||||||||| | |||||||||||||||| |||||||| ||||| ||||| ||||||||||||||    
T  19318520 gagttcgggtatgctccatttaggctaagctccatttactccatttaaggtttagatgcaagacatgt 19318453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 75 - 142
Target Start/End: Complemental strand, 35207476 - 35207409
Alignment:
Q  75 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    |||||||| |||| | |||||||||||| ||| |||||||| ||||||||||||||||||||||||||    
T  35207476 gagttcggatatgctccatttaggctaaactccatttactccatttagggtttggatgcaagacatgt 35207409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 73 - 142
Target Start/End: Complemental strand, 39983940 - 39983871
Alignment:
Q  73 aggagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    ||||||||  ||||| | ||||||||| |||||| |||||||| ||||||||||||||||||||||||||    
T  39983940 aggagttcatgtatgctccatttaggcgaagctccatttactccatttagggtttggatgcaagacatgt 39983871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 75 - 142
Target Start/End: Complemental strand, 19318449 - 19318382
Alignment:
Q  75 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    ||||||||||||| | |||||||||||||||  |||||||| ||||| ||||| ||||||||||||||    
T  19318449 gagttcgggtatgctccatttaggctaagcttcatttactccatttaaggtttagatgcaagacatgt 19318382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 142
Target Start/End: Complemental strand, 29474697 - 29474646
Alignment:
Q  91 catttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    |||||||||||| ||| ||||||||||||||| | |||||||||||||||||    
T  29474697 catttaggctaaactccatttactctatttagagcttggatgcaagacatgt 29474646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 142
Target Start/End: Complemental strand, 2834500 - 2834433
Alignment:
Q  75 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    ||||| ||||||| | ||||||||||||| || ||||| || ||||||||||||||| ||| ||||||    
T  2834500 gagtttgggtatgctccatttaggctaagttccatttattccatttagggtttggatacaaaacatgt 2834433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 142
Target Start/End: Original strand, 35363318 - 35363385
Alignment:
Q  75 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    ||||||||||||| | ||||||||||||| |  |||||||| |||||| |||| ||||||| ||||||    
T  35363318 gagttcgggtatgctccatttaggctaagtttcatttactccatttagagtttagatgcaacacatgt 35363385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 74 - 142
Target Start/End: Complemental strand, 24883270 - 24883202
Alignment:
Q  74 ggagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    |||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||| ||||    
T  24883270 ggagttcgggtatgttccatttaggctaagctccatttactccatttagggtttggatgcaagatatgt 24883202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 75 - 139
Target Start/End: Original strand, 24882971 - 24883035
Alignment:
Q  75 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagaca 139  Q
    ||||||||||||| | |||||||||||| ||| |||||||| |||||||||||||||||||||||    
T  24882971 gagttcgggtatgctccatttaggctaatctccatttactccatttagggtttggatgcaagaca 24883035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 76 - 142
Target Start/End: Original strand, 27171800 - 27171866
Alignment:
Q  76 agttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    |||||||||||| |||||||||||||||||  |||||||| ||||| |||||||||| |||||||||    
T  27171800 agttcgggtatgcttcatttaggctaagcttcatttactccatttatggtttggatgtaagacatgt 27171866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 77 - 142
Target Start/End: Original strand, 34969987 - 34970052
Alignment:
Q  77 gttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    ||||||||||| |||||||||| ||| ||| |||||||| ||||||| ||||||||||||||||||    
T  34969987 gttcgggtatgcttcatttaggttaaactccatttactcaatttaggatttggatgcaagacatgt 34970052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 82 - 142
Target Start/End: Complemental strand, 49777117 - 49777057
Alignment:
Q  82 ggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    |||||| | |||||||||||| ||| ||||| |||||||||||||||||||||||||||||    
T  49777117 ggtatgctccatttaggctaaactccatttattctatttagggtttggatgcaagacatgt 49777057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 75 - 142
Target Start/End: Original strand, 3385308 - 3385375
Alignment:
Q  75 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    ||||||||||||| |||||||||||||||||   ||||| | |||||||||||||||| |||||||||    
T  3385308 gagttcgggtatgcttcatttaggctaagcttcgtttaccccatttagggtttggatgtaagacatgt 3385375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 75 - 142
Target Start/End: Complemental strand, 3385612 - 3385545
Alignment:
Q  75 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    ||||||||||||| | ||||||||| |||||| |||||||| |||||||||||||||| |||| ||||    
T  3385612 gagttcgggtatgctccatttaggccaagctccatttactccatttagggtttggatgtaagatatgt 3385545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 75 - 142
Target Start/End: Original strand, 49776819 - 49776886
Alignment:
Q  75 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    ||||||||||||| | |||||| ||||||||  |||||||| ||||||| ||||||||||||||||||    
T  49776819 gagttcgggtatgctccatttaagctaagctttatttactccatttaggatttggatgcaagacatgt 49776886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 76 - 142
Target Start/End: Complemental strand, 33401156 - 33401090
Alignment:
Q  76 agttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    ||||||| |||| | |||||||||||||||||||||||| |||||| ||||| |||| |||||||||    
T  33401156 agttcggatatgctacatttaggctaagctcaatttactttatttaaggtttagatgtaagacatgt 33401090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 142
Target Start/End: Complemental strand, 33156739 - 33156688
Alignment:
Q  91 catttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    |||||||||||||||  |||||||| ||||||||||||||| ||||||||||    
T  33156739 catttaggctaagctttatttactccatttagggtttggatacaagacatgt 33156688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 142
Target Start/End: Complemental strand, 34622626 - 34622559
Alignment:
Q  75 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    ||||||||||||| | ||||||| |||||||| | |||||| ||||| |||||| |||||||||||||    
T  34622626 gagttcgggtatgctccatttagactaagctccagttactccatttaaggtttgaatgcaagacatgt 34622559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 142
Target Start/End: Original strand, 39781073 - 39781137
Alignment:
Q  78 ttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    ||||||||||||||||||||  |||| |  |||||||  |||||| |||||||||| ||||||||    
T  39781073 ttcgggtatgtttcatttagattaagtttcatttacttcatttagagtttggatgcgagacatgt 39781137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 66 - 142
Target Start/End: Original strand, 31193956 - 31194032
Alignment:
Q  66 ggggttgaggagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    |||||||  ||||||||||||| | |||||||||||||||| |||||||| ||||| ||||||||||||||||||||    
T  31193956 ggggttggtgagttcgggtatgctccatttaggctaagctccatttactccatttaaggtttggatgcaagacatgt 31194032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 75 - 142
Target Start/End: Complemental strand, 31194266 - 31194199
Alignment:
Q  75 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    ||||||||||||| | |||||||||||||||| |||||||| ||||| ||||||||||||||||||||    
T  31194266 gagttcgggtatgctccatttaggctaagctccatttactccatttaaggtttggatgcaagacatgt 31194199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 73 - 142
Target Start/End: Original strand, 36955301 - 36955370
Alignment:
Q  73 aggagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    ||||||||||||| | | |||||||||||||||  |||||||| ||||||||||||||||||||||||||    
T  36955301 aggagttcgggtaggctccatttaggctaagcttcatttactccatttagggtttggatgcaagacatgt 36955370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 74 - 142
Target Start/End: Complemental strand, 14076971 - 14076903
Alignment:
Q  74 ggagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    ||||||||| |||| | ||||||||||||| || |||||||| ||||||||||||||||||||||||||    
T  14076971 ggagttcggatatgctccatttaggctaagttctatttactccatttagggtttggatgcaagacatgt 14076903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 75 - 142
Target Start/End: Original strand, 17370067 - 17370134
Alignment:
Q  75 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    ||||||||||||| | |||||| ||||| ||| |||||||| ||||||||||||||||||||||||||    
T  17370067 gagttcgggtatgctccatttatgctaaactccatttactccatttagggtttggatgcaagacatgt 17370134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 91 - 142
Target Start/End: Complemental strand, 36955579 - 36955528
Alignment:
Q  91 catttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  36955579 catttaggctaagctctatttactctatttagggtttggttgcaagacatgt 36955528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 75 - 142
Target Start/End: Original strand, 8754658 - 8754725
Alignment:
Q  75 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    ||||||||||||  | ||||||| |||| ||| ||||||||||||||||||||||||| |||||||||    
T  8754658 gagttcgggtatcctccatttagactaaactccatttactctatttagggtttggatggaagacatgt 8754725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 142
Target Start/End: Original strand, 43449493 - 43449534
Alignment:
Q  101 aagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    |||||||||||| |||||||||| ||||||||||||||||||    
T  43449493 aagctcaatttagtctatttaggctttggatgcaagacatgt 43449534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 142
Target Start/End: Complemental strand, 32347182 - 32347131
Alignment:
Q  91 catttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    |||||||||||||||| | |||||| ||||| |||||||||| |||||||||    
T  32347182 catttaggctaagctccaattactccatttaaggtttggatgtaagacatgt 32347131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 142
Target Start/End: Complemental strand, 42546617 - 42546583
Alignment:
Q  108 atttactctatttagggtttggatgcaagacatgt 142  Q
    |||||||| ||||||||||||||||||||||||||    
T  42546617 atttactccatttagggtttggatgcaagacatgt 42546583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 75 - 142
Target Start/End: Original strand, 50544256 - 50544323
Alignment:
Q  75 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    |||||||| |||| | |||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  50544256 gagttcggatatgctccatttaggctaagctccatttattctatttagggtttggatgcaagacatgt 50544323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 75 - 142
Target Start/End: Complemental strand, 54316130 - 54316063
Alignment:
Q  75 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    |||| |||||||| | |||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  54316130 gagtccgggtatgctccatttaggctaagctctatttactccatttagggtttggatgcaagacatgt 54316063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 75 - 142
Target Start/End: Original strand, 7061972 - 7062039
Alignment:
Q  75 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    ||||||||||||| | |||||||||||| ||| |||||||| ||||| ||||||||||||||||||||    
T  7061972 gagttcgggtatgctccatttaggctaacctctatttactccatttatggtttggatgcaagacatgt 7062039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 91 - 139
Target Start/End: Original strand, 42475892 - 42475940
Alignment:
Q  91 catttaggctaagctcaatttactctatttagggtttggatgcaagaca 139  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||    
T  42475892 catttaggctaagcttcatttactctatttagggtttggatgcaagaca 42475940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 80 - 142
Target Start/End: Original strand, 46993072 - 46993134
Alignment:
Q  80 cgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    |||||||| | |||||||| ||||||| ||||| |||||||||||||||||||||||| ||||    
T  46993072 cgggtatgctccatttaggttaagctccatttattctatttagggtttggatgcaagatatgt 46993134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 140
Target Start/End: Complemental strand, 9551528 - 9551461
Alignment:
Q  73 aggagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacat 140  Q
    ||||||||||||||| | ||||||| |||| ||| |||||||| |||||||| ||||||| |||||||    
T  9551528 aggagttcgggtatgctccatttagactaaactccatttactccatttagggcttggatggaagacat 9551461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 142
Target Start/End: Original strand, 11789859 - 11789926
Alignment:
Q  75 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    ||||||||||||| | ||||||||| |||||  |||||||| ||||||||||| ||||||||| ||||    
T  11789859 gagttcgggtatgctccatttaggcaaagcttcatttactccatttagggtttagatgcaagatatgt 11789926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 142
Target Start/End: Complemental strand, 17915049 - 17914982
Alignment:
Q  75 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    |||||||| |||| | ||||||||||||| || |||||||| |||||  |||||||||||||||||||    
T  17915049 gagttcggatatgctccatttaggctaagttccatttactccatttaaagtttggatgcaagacatgt 17914982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 140
Target Start/End: Complemental strand, 24674022 - 24673957
Alignment:
Q  75 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacat 140  Q
    |||||||| |||| | |||||||||||| ||  ||||||||||||||| ||||||||| |||||||    
T  24674022 gagttcggatatgctccatttaggctaaacttcatttactctatttagagtttggatgtaagacat 24673957  T

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Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 142
Target Start/End: Complemental strand, 23655366 - 23655302
Alignment:
Q  78 ttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    |||||||||| | |||||||| ||||||  ||||| || ||||||||||| ||||||||||||||    
T  23655366 ttcgggtatgctccatttaggttaagcttcatttattccatttagggtttagatgcaagacatgt 23655302  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 142
Target Start/End: Complemental strand, 5466122 - 5466083
Alignment:
Q  103 gctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    |||| ||||||||||||||||||||||||| |||||||||    
T  5466122 gctctatttactctatttagggtttggatgtaagacatgt 5466083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 134
Target Start/End: Complemental strand, 21785983 - 21785940
Alignment:
Q  91 catttaggctaagctcaatttactctatttagggtttggatgca 134  Q
    |||||||||||||||| |||||||| |||||| |||||||||||    
T  21785983 catttaggctaagctccatttactccatttagagtttggatgca 21785940  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 144
Target Start/End: Original strand, 3556382 - 3556435
Alignment:
Q  91 catttaggctaagctcaatttactctatttagggtttggatgcaagacatgttg 144  Q
    |||||| ||||| ||  |||||||| ||||| ||||||||||||||||||||||    
T  3556382 catttaagctaaacttcatttactccatttaaggtttggatgcaagacatgttg 3556435  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 142
Target Start/End: Original strand, 5465855 - 5465920
Alignment:
Q  77 gttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    ||||||||||| | ||||||||||||| |  |||||||  ||||||||||| |||| |||||||||    
T  5465855 gttcgggtatgctccatttaggctaagtttcatttacttcatttagggtttagatgtaagacatgt 5465920  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 142
Target Start/End: Complemental strand, 8538401 - 8538361
Alignment:
Q  102 agctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    ||||| ||||| || ||||||||||||||||||||||||||    
T  8538401 agctccatttagtccatttagggtttggatgcaagacatgt 8538361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 142
Target Start/End: Complemental strand, 51959773 - 51959733
Alignment:
Q  103 gctcaatttactctatttaggg-tttggatgcaagacatgt 142  Q
    |||||||||| ||||||||||| ||||||||||||||||||    
T  51959773 gctcaatttagtctatttaggggtttggatgcaagacatgt 51959733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 75 - 142
Target Start/End: Original strand, 8799317 - 8799384
Alignment:
Q  75 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    ||||||||||||| | ||||||||||| |||| |||||||| ||||||||||||||||||||||||||    
T  8799317 gagttcgggtatgctccatttaggctaggctccatttactccatttagggtttggatgcaagacatgt 8799384  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 75 - 142
Target Start/End: Original strand, 38499819 - 38499886
Alignment:
Q  75 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    ||||||||||||| | |||||||||||||||| |||||||| ||||||||||||||| ||||||||||    
T  38499819 gagttcgggtatgctccatttaggctaagctccatttactccatttagggtttggatacaagacatgt 38499886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 76 - 142
Target Start/End: Complemental strand, 4041483 - 4041417
Alignment:
Q  76 agttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    |||||||||||| | |||||||||||||||  |||||||| ||||||||||||||||||||||||||    
T  4041483 agttcgggtatgctccatttaggctaagcttcatttactccatttagggtttggatgcaagacatgt 4041417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 74 - 142
Target Start/End: Complemental strand, 38500123 - 38500055
Alignment:
Q  74 ggagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    |||||||||||||| | |||||||||||||||| |||||||| | |||||||||||||| |||||||||    
T  38500123 ggagttcgggtatgctccatttaggctaagctccatttactccaattagggtttggatgtaagacatgt 38500055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 80 - 142
Target Start/End: Complemental strand, 53197279 - 53197217
Alignment:
Q  80 cgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    |||||||| | |||||||||||||||  |||||||| ||||||||||||||||||||||||||    
T  53197279 cgggtatgctccatttaggctaagcttcatttactccatttagggtttggatgcaagacatgt 53197217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 82 - 142
Target Start/End: Complemental strand, 43797646 - 43797586
Alignment:
Q  82 ggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    |||||| | ||||||||||||| || ||||||||||||||||||||||||| |||||||||    
T  43797646 ggtatgctccatttaggctaagatccatttactctatttagggtttggatgaaagacatgt 43797586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 91 - 142
Target Start/End: Original strand, 43797368 - 43797419
Alignment:
Q  91 catttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    |||||||||||||||| |||||||| ||||| ||||||||||||||||||||    
T  43797368 catttaggctaagctccatttactccatttaaggtttggatgcaagacatgt 43797419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 74 - 142
Target Start/End: Original strand, 53196987 - 53197055
Alignment:
Q  74 ggagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    ||||||||||||||   |||||| ||||| ||  |||||||||||||||||||||||||||| ||||||    
T  53196987 ggagttcgggtatgccccatttaagctaaacttcatttactctatttagggtttggatgcaaaacatgt 53197055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 142
Target Start/End: Complemental strand, 46883685 - 46883646
Alignment:
Q  103 gctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    |||| |||||||| ||||||||||||||||||||||||||    
T  46883685 gctccatttactccatttagggtttggatgcaagacatgt 46883646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 142
Target Start/End: Complemental strand, 25349986 - 25349944
Alignment:
Q  100 taagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    ||||||| ||||| ||||||||||||||||||| |||||||||    
T  25349986 taagctccatttattctatttagggtttggatgtaagacatgt 25349944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 142
Target Start/End: Complemental strand, 43797941 - 43797875
Alignment:
Q  76 agttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    ||||| |||||| |||||||  ||||||  | |||||||| |||||||| |||||||||||||||||    
T  43797941 agttcaggtatgcttcatttttgctaagtgctatttactccatttagggcttggatgcaagacatgt 43797875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 112
Target Start/End: Original strand, 29828685 - 29828722
Alignment:
Q  75 gagttcgggtatgtttcatttaggctaagctcaattta 112  Q
    ||||||||||||| |||||||||||||||||| |||||    
T  29828685 gagttcgggtatgcttcatttaggctaagctccattta 29828722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 142
Target Start/End: Complemental strand, 48346281 - 48346213
Alignment:
Q  74 ggagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    |||||||||||||| | |||||||| | || || ||||||| |||||||  ||||||||||| ||||||    
T  48346281 ggagttcgggtatgctccatttaggttgagttctatttactttatttagaatttggatgcaaaacatgt 48346213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 142
Target Start/End: Original strand, 22748586 - 22748655
Alignment:
Q  73 aggagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    ||||||||||||||| |  |||||||||| |||| |||||||| ||||| | ||||||||||||||||||    
T  22748586 aggagttcgggtatgctcaatttaggctatgctccatttactccatttaagatttggatgcaagacatgt 22748655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 70 - 142
Target Start/End: Original strand, 16125517 - 16125589
Alignment:
Q  70 ttgaggagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    |||| ||||||||||||| | |||||||||||| ||  ||||| |  ||||||||||||||||||||||||||    
T  16125517 ttgacgagttcgggtatgctccatttaggctaaacttcatttatttcatttagggtttggatgcaagacatgt 16125589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 142
Target Start/End: Original strand, 24197709 - 24197750
Alignment:
Q  101 aagctcaatttactctatttagggtttggatgcaagacatgt 142  Q
    |||||||||||| |||||||||  ||||||||||||||||||    
T  24197709 aagctcaatttagtctatttagactttggatgcaagacatgt 24197750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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