View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18849_low_13 (Length: 249)
Name: NF18849_low_13
Description: NF18849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18849_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 2 - 230
Target Start/End: Original strand, 45945532 - 45945760
Alignment:
| Q |
2 |
ggaccataactacgtgtaacacatgcaaaagcaaagatataataaaaaagacattttactcaaagacatgtacctcaaagatacgtagtttggagtaatt |
101 |
Q |
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| T |
45945532 |
ggaccataactacgtgtaacacatgcaaaagcaaagatataataaaaaagacattttactcaaagacatgtacctcgaagatacgtagtttggagtaatt |
45945631 |
T |
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| Q |
102 |
gatgacataatatgccatagcaaattcggtttggttggctggagggtacacaggatcaatctccttaacaatgcaaccttgtgaaacaaggatcttacga |
201 |
Q |
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| T |
45945632 |
gatgacataatatgccatagcaaattcggtttggttggctggagggtacacaggagcaatctccttaacaatgcaaccttgtgaaacaaggatcttacga |
45945731 |
T |
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| Q |
202 |
tgttcttcgggaacatcaggtaagatagc |
230 |
Q |
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|||||||| |||||||||||||||||||| |
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| T |
45945732 |
tgttcttcaggaacatcaggtaagatagc |
45945760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 82 - 182
Target Start/End: Complemental strand, 55221583 - 55221483
Alignment:
| Q |
82 |
atacgtagtttggagtaattgatgacataatatgccatagcaaattcggtttggttggctggagggtacacaggatcaatctccttaacaatgcaacctt |
181 |
Q |
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||||||||||||||||| |||||||||||||| ||||||||||||| |||||| || |||||||| ||||| ||||||| ||||||||||||||| |
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| T |
55221583 |
atacgtagtttggagtagttgatgacataataagccatagcaaattgggtttgattcttaggagggtaaacaggtgcaatctctctaacaatgcaacctt |
55221484 |
T |
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| Q |
182 |
g |
182 |
Q |
| |
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| T |
55221483 |
g |
55221483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 82 - 182
Target Start/End: Complemental strand, 37697720 - 37697620
Alignment:
| Q |
82 |
atacgtagtttggagtaattgatgacataatatgccatagcaaattcggtttggttggctggagggtacacaggatcaatctccttaacaatgcaacctt |
181 |
Q |
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||||||| ||||||||| |||||||||||||| ||||| ||||| | |||||||| ||||||| || ||||| ||||| || ||||||||||||||| |
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| T |
37697720 |
atacgtaatttggagtagttgatgacataataagccatggcaaactgagtttggttttctggaggataaacaggttcaatttctctaacaatgcaacctt |
37697621 |
T |
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| Q |
182 |
g |
182 |
Q |
| |
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| T |
37697620 |
g |
37697620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 182
Target Start/End: Original strand, 37687798 - 37687899
Alignment:
| Q |
82 |
atacgtagtttggagtaattgatgacataatatgccatagcaaattcggtttggttggc-tggagggtacacaggatcaatctccttaacaatgcaacct |
180 |
Q |
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||||||| ||||||||| |||||||||||||| ||||| ||||| | |||||||| | |||||| || ||||| ||||| || |||||||||||||| |
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| T |
37687798 |
atacgtaatttggagtagttgatgacataataagccatggcaaactgagtttggttttcttggaggataaacaggttcaatttctctaacaatgcaacct |
37687897 |
T |
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| Q |
181 |
tg |
182 |
Q |
| |
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|| |
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|
| T |
37687898 |
tg |
37687899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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