View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18849_low_17 (Length: 213)
Name: NF18849_low_17
Description: NF18849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18849_low_17 |
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| [»] scaffold0855 (1 HSPs) |
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| [»] scaffold0847 (1 HSPs) |
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Alignment Details
Target: scaffold0855 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: scaffold0855
Description:
Target: scaffold0855; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 13 - 195
Target Start/End: Original strand, 2723 - 2905
Alignment:
| Q |
13 |
gagatgaagaggatgaaaatgagatgggttgagtgtgtgaggaaaaggatgaaagcatgaaaaggaggcagggttgagtgcgtgagtaagttagcattca |
112 |
Q |
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| T |
2723 |
gagaagaagaggatgaaaatgagatgggttgcgtgtgtgaggaaaaggatgaaagcatgaaaaggaggcagggttgagtgcgtgagtaagttagcattca |
2822 |
T |
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| Q |
113 |
aggcttgtgtgatgtgtgttttgattgagtgtggtgtatgaaaacatcattctttggattttcgtgaatattcataatacaac |
195 |
Q |
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| T |
2823 |
aggcttgtgtgatgtgtgttttgattgagtgtggtgtatgaaaacatcattctttggattttcgtgaatattcataatacaac |
2905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0847 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: scaffold0847
Description:
Target: scaffold0847; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 13 - 195
Target Start/End: Original strand, 2888 - 3070
Alignment:
| Q |
13 |
gagatgaagaggatgaaaatgagatgggttgagtgtgtgaggaaaaggatgaaagcatgaaaaggaggcagggttgagtgcgtgagtaagttagcattca |
112 |
Q |
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| T |
2888 |
gagaagaagaggatgaaaatgagatgggttgcgtgtgtgaggaaaaggatgaaagcatgaaaaggaggcagggttgagtgcgtgagtaagttagcattca |
2987 |
T |
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| Q |
113 |
aggcttgtgtgatgtgtgttttgattgagtgtggtgtatgaaaacatcattctttggattttcgtgaatattcataatacaac |
195 |
Q |
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| T |
2988 |
aggcttgtgtgatgtgtgttttgattgagtgtggtgtatgaaaacatcattctttggattttcgtgaatattcataatacaac |
3070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 1627896 - 1627996
Alignment:
| Q |
19 |
aagaggatgaaaatgagatggg--ttgagtgtgtgaggaaaaggatgaaagcatgaaaaggaggcagggttgagtgcgtgagtaagttagcattcaaggc |
116 |
Q |
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| T |
1627896 |
aagatgatgaaaatgagatgggggttgagtgcgtgagcaagaagatgaaaggatgaaaaggagac-gggttgagtgtgtgagtaacttagtattcaaggc |
1627994 |
T |
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| Q |
117 |
tt |
118 |
Q |
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|| |
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| T |
1627995 |
tt |
1627996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 95 - 145
Target Start/End: Original strand, 1636420 - 1636470
Alignment:
| Q |
95 |
tgagtaagttagcattcaaggcttgtgtgatgtgtgttttgattgagtgtg |
145 |
Q |
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| T |
1636420 |
tgagtaacttggtattcaaggcttgtgtgatatgtgttttgattgagtgtg |
1636470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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