View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18849_low_4 (Length: 339)
Name: NF18849_low_4
Description: NF18849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18849_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 146; Significance: 7e-77; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 48570616 - 48570471
Alignment:
| Q |
1 |
ttgtatgacatttgctctctagggcttttctttgaaccaaaacttgatttttatcagagcctcttacttgtggtgattctaccttgatcttatcattccg |
100 |
Q |
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| T |
48570616 |
ttgtatgacatttgctctctagggcttttctttgaaccaaaacttgatttttatcagagcctcttacttgtggtgattctaccttgatcttatcattccg |
48570517 |
T |
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| Q |
101 |
ttatggattatggccatttctaccatttccttccgagtacttcacc |
146 |
Q |
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| T |
48570516 |
ttatggattatggccatttctaccatttccttccgagtacttcacc |
48570471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 181 - 316
Target Start/End: Complemental strand, 48570436 - 48570301
Alignment:
| Q |
181 |
gctactttgttggaataaatcgatatcattaagttagattcttcgactcatatggaagcacttaaatcgatatcatgtgatattcacagcctatcaccac |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
48570436 |
gctactttgttggaataaatcgatatcattaagttagattcttcgactcatatggaagcacttaaatcgatatcatgtgatattcacagcctctcaccac |
48570337 |
T |
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| Q |
281 |
aagtgataatgtttgctattaattttgtttttatat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
48570336 |
aagtgataatgtttgctattaattttgtttttatat |
48570301 |
T |
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