View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18849_low_6 (Length: 306)
Name: NF18849_low_6
Description: NF18849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18849_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 14 - 282
Target Start/End: Complemental strand, 38693448 - 38693178
Alignment:
| Q |
14 |
catcaatgaaattgatccaatacaaacatagtaggatacataccgatcgtaggaatggttgtaacgatctctccaagcttgagcttataaagaatggtgg |
113 |
Q |
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| T |
38693448 |
catcaatgaaattgatccaatacaaacatagtaggatacataccgatcgtaggaatggttgtaacgatctctccaagcttgagcttataaagaatagtgg |
38693349 |
T |
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| Q |
114 |
tcttaccagctgcatcgagacctaccataagtatacgcatctctttcttggcaaatagccggctaaacagcttcgtgaatgacaatcccatttttcaagt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38693348 |
tcttaccagctgcatcgagacctaccataagtatacgcatctctttcttggcaaatagccggctaaacagcttcgtgaatgacaatcccatttttcaagt |
38693249 |
T |
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| Q |
214 |
tttctgaatccacaca--cacaactcaattttcttcgatccaaatttcaatcgcaacatatcaaatttcaa |
282 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
38693248 |
tttctgaatccacacacacacaactcaattttcttcgatccaaatttcaatcgcaacaaatcaaatttcaa |
38693178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 65 - 195
Target Start/End: Original strand, 45057063 - 45057193
Alignment:
| Q |
65 |
ggaatggttgtaacgatctctccaagcttgagcttataaagaatggtggtcttaccagctgcatcgagacctaccataagtatacgcatctctttcttgg |
164 |
Q |
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|||||||| || || || |||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||| || ||||| | |
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| T |
45057063 |
ggaatggtggtgacaatttctccaagcttgagcttatagagaatggtggtcttaccagcggcatcgagaccgaccataagtatacgcatttccttcttcg |
45057162 |
T |
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| Q |
165 |
caaatagccggctaaacagcttcgtgaatga |
195 |
Q |
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| T |
45057163 |
caaacaaccggctgaatagcttggtgaatga |
45057193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 54 - 194
Target Start/End: Complemental strand, 14765963 - 14765823
Alignment:
| Q |
54 |
taccgatcgtaggaatggttgtaacgatctctccaagcttgagcttataaagaatggtggtcttaccagctgcatcgagacctaccataagtatacgcat |
153 |
Q |
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||||||| ||||| || || || || || ||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||| || || ||||| |
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| T |
14765963 |
taccgatagtagggatagtggtgacaatttctccaagcttgagcttgtagagaatggtggtcttaccagctgcatcgagaccaaccatcagaattcgcat |
14765864 |
T |
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| Q |
154 |
ctctttcttggcaaatagccggctaaacagcttcgtgaatg |
194 |
Q |
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| T |
14765863 |
ttccttcttcgcaaataaccgactgaacagcttcgtgaatg |
14765823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 62 - 194
Target Start/End: Complemental strand, 14760211 - 14760079
Alignment:
| Q |
62 |
gtaggaatggttgtaacgatctctccaagcttgagcttataaagaatggtggtcttaccagctgcatcgagacctaccataagtatacgcatctctttct |
161 |
Q |
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||||| ||||| || ||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||| ||||| || || ||||| || |||| |
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| T |
14760211 |
gtagggatggtggtgacgatctctccaagcttgagcttgtaaaggatggtggtcttaccagccgcatcgagaccaaccatcagaattcgcatttccttct |
14760112 |
T |
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| Q |
162 |
tggcaaatagccggctaaacagcttcgtgaatg |
194 |
Q |
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| T |
14760111 |
tcgcgaataaccgactgaacagctttgtgaatg |
14760079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 62 - 192
Target Start/End: Complemental strand, 947261 - 947131
Alignment:
| Q |
62 |
gtaggaatggttgtaacgatctctccaagcttgagcttataaagaatggtggtcttaccagctgcatcgagacctaccataagtatacgcatctctttct |
161 |
Q |
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||||| ||||| |||||||| ||||||||||| | ||||| | ||| || ||||||||||| ||||||||||||||||| | || | |||||| |||| |
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| T |
947261 |
gtagggatggtagtaacgatttctccaagcttcaatttatacaaaatagtagtcttaccagccgcatcgagacctaccatcaaaattctcatctccttct |
947162 |
T |
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| Q |
162 |
tggcaaatagccggctaaacagcttcgtgaa |
192 |
Q |
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| ||||| | || || |||||||||||||| |
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| T |
947161 |
tcgcaaacaacctactgaacagcttcgtgaa |
947131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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