View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18849_low_7 (Length: 301)
Name: NF18849_low_7
Description: NF18849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18849_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 280
Target Start/End: Complemental strand, 41722469 - 41722206
Alignment:
| Q |
18 |
caagtgccaacagatatttctcaagacaatagtttccgt-gtccttgctacaaaccaatttttcgcatgaaaattgaaagcagcatcgcatataattatc |
116 |
Q |
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| T |
41722469 |
caagtgccaacagatatttctcaagacaatagtttccgttgtccttgctacaaaccaatttttcgcatgaaaattgaaagcagcatcacatataattatc |
41722370 |
T |
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| Q |
117 |
aacaatatacaattacctcaaacatacctaatatagttaattagttatagtaatcaaattcatgctagacaaatctcgtgaagaagaactttgccatcta |
216 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
41722369 |
aacaatatacaattacctcaaacatatctaatatagttaattaattatagtaatcaaactcatgctagacaaatctcgtgaagaagaactttgccatcta |
41722270 |
T |
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| Q |
217 |
ttgtagccttagctggtttgagatattaatcttcatagtcgtgattaaagaatacccattcatt |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41722269 |
ttgtagccttagctggtttgagatattaatcttcatagtcgtgattaaagaatacccattcatt |
41722206 |
T |
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