View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18849_low_8 (Length: 301)
Name: NF18849_low_8
Description: NF18849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18849_low_8 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 13887618 - 13887918
Alignment:
| Q |
1 |
tatgtgtaagttttatattagctaggagagacacttcttcagtagctttaagctggtttttctggttacttaatcagaatcatgaagttgaggagaaaat |
100 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
13887618 |
tatgtgtaagttttatattagctgggagagacacttcttcagttgctttaagctggtttttctggttacttaatcagaatcatgaagtggaggagaaaat |
13887717 |
T |
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| Q |
101 |
attagaagagatttgcagggttgtgagtcaaagggaggatattaatattaataaggaagtgtttaatgattctttaagattcaaacctgaggagattaag |
200 |
Q |
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| T |
13887718 |
attagaagagatttgcagggttgtgagtcaaagggaggatattaatattaataaggaagtgtttaatgattctttaagattcaaacctgaggagattaag |
13887817 |
T |
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| Q |
201 |
aagatggattatttgcatgctgctctttcagaaactcttagattgtatccttctgttcctatggatcataaagaggtaataaaagtttaattttagctat |
300 |
Q |
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| T |
13887818 |
aagatgggttatttgcatgctgctctttcagaaactcttagattgtatccttctgttcctatggatcataaagaggtaataaaagtttaattttagctat |
13887917 |
T |
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| Q |
301 |
t |
301 |
Q |
| |
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| T |
13887918 |
t |
13887918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 3 - 301
Target Start/End: Complemental strand, 13897590 - 13897298
Alignment:
| Q |
3 |
tgtgtaagttttatattagctaggagagacacttcttcagtagctttaagctggtttttctggttacttaatcagaatcatgaagttgaggagaaaatat |
102 |
Q |
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| T |
13897590 |
tgtgtaaatttcatattagctgggagagacacttcttcagttgctttaagctggtttttctggttggttgatcagaatcatgaagttgaggagaaaatat |
13897491 |
T |
|
| Q |
103 |
tagaagagatttgcagggttgtgagtcaaagggaggatattaatattaataaggaagtgtttaatgattctttaagattcaaacctgaggagattaagaa |
202 |
Q |
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| T |
13897490 |
tagaagagatttgcagggttgtgtgtcaaagggaggatatt------aataaggaagtgtttaatgattctttgagattcaagcctgaggagattaagaa |
13897397 |
T |
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| Q |
203 |
gatggattatttgcatgctgctctttcagaaactcttagattgtatccttctgttcctatggatcataaagaggtaataaaagtttaattttagctatt |
301 |
Q |
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| T |
13897396 |
gatggattatttgcatgcagctctttcagaagctcttagattatatccttctgttcctgtggattgtaaggaggtaataactgttcaattttagatatt |
13897298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 138
Target Start/End: Complemental strand, 7295612 - 7295489
Alignment:
| Q |
15 |
atattagctaggagagacacttcttc---agtagctttaagctggtttttctggttacttaatcagaatcatgaagttgaggagaaaatattagaagaga |
111 |
Q |
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| T |
7295612 |
atattagccgggagagacacttcttctttagttgctttgaggcggcttttctggttgcttgatcataataatgaaatggaggaaaaaatagtaga---ga |
7295516 |
T |
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| Q |
112 |
tttgcagggttgtgagtcaaagggagg |
138 |
Q |
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| T |
7295515 |
tttgcagggtggtgagtcaaagggagg |
7295489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 3 - 121
Target Start/End: Complemental strand, 1034647 - 1034529
Alignment:
| Q |
3 |
tgtgtaagttttatattagctaggagagacacttcttcagtagctttaagctggtttttctggttacttaatcagaatcatgaagttgaggagaaaatat |
102 |
Q |
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||||||| ||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
1034647 |
tgtgtaaattttatattagctgggagagacacttcttcagttgctttgagctggtttttctggttggttgatcagaatcatgaagttgaggagaaaatat |
1034548 |
T |
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| Q |
103 |
tagaagagatttgcagggt |
121 |
Q |
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| T |
1034547 |
tagaagaaatttgcagggt |
1034529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 190 - 280
Target Start/End: Complemental strand, 1034478 - 1034388
Alignment:
| Q |
190 |
aggagattaagaagatggattatttgcatgctgctctttcagaaactcttagattgtatccttctgttcctatggatcataaagaggtaat |
280 |
Q |
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| T |
1034478 |
aggagattaagaagatggattatttgcatgctgctctttcagaagctcttagattgtacccttctgtgcctgtggatcgtaaggaggtaat |
1034388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 28666929 - 28666656
Alignment:
| Q |
1 |
tatgtgtaagttttatattagctaggagagacacttcttcagtagctttaagctggtttttctggttacttaatcagaatcatgaagttgaggagaaaat |
100 |
Q |
| |
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||||||| | ||||||| ||||| |||||||||||||||| || ||||| || |||||||| ||||||||| |||||||||||||||| |||||||| || |
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| T |
28666929 |
tatgtgtgaattttatactagctgggagagacacttcttctgtggctttgagttggtttttttggttacttgatcagaatcatgaagtggaggagaagat |
28666830 |
T |
|
| Q |
101 |
attagaagagatttgcagggttgtgagtcaaagggaggatattaatattaataaggaagtgtttaatgattctttaagattcaaacctgaggagattaag |
200 |
Q |
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|||||||||||| |||| ||| |||||||| || | | |||| || ||||||| ||| | ||||||| | ||| | ||||| ||||| || |
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| T |
28666829 |
attagaagagatatgcaaggtggtgagtcagag------aaatgatataaagaaggaagaatttgaaaattctttgatatttaggcctgaagagataaaa |
28666736 |
T |
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| Q |
201 |
aagatggattatttgcatgctgctctttcagaaactcttagattgtatccttctgttcctatggatcataaagaggtaat |
280 |
Q |
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|||||||| |||||||||||| | | || |||||||| ||||| ||||||||||||||| | ||||| || |||||||| |
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| T |
28666735 |
aagatggactatttgcatgcttgtttatctgaaactctcagattatatccttctgttcctgttgatcacaaggaggtaat |
28666656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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