View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1884R-Insertion-1 (Length: 1150)
Name: NF1884R-Insertion-1
Description: NF1884R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1884R-Insertion-1 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 576; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 576; E-Value: 0
Query Start/End: Original strand, 317 - 1027
Target Start/End: Original strand, 30435873 - 30436583
Alignment:
| Q |
317 |
gtatcgctaaaattgaaatacggatattgaatttcgatttaattttaccttgagttggaatgcatgactgattcagttgtgttgccagagagatggaaat |
416 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
30435873 |
gtatcgctaaaattgaaatacggatattgaatttcgatttaattttaccttgagttggaatgcatgactgattcagttgtggtgccagagagatggaaat |
30435972 |
T |
|
| Q |
417 |
cgtctctgtgaggttgcagttgcaacggtttcgacagcatattagaggcggtggttgtaggtgtagttgtggttgtggacttgtggttgacaccggtaga |
516 |
Q |
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||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
30435973 |
cgtctctgtgaagttgcagttgcaacagtttcgacagcatattagaggcggtggttgtaggtgtggttgtggttgtggacttgtggttgacaccggtaga |
30436072 |
T |
|
| Q |
517 |
tggagatgtatgtgaattgggagttgatgcttattcttactccatgattctcttctcttctcaatctcaatctaacccttgctgttctgatgtctcttgt |
616 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30436073 |
tggagatgtatgtgaatcgggagttgatgcttattcttactccatgattctcttctcttctcaatctcaatctaacccttgctgttctgatgtctcttgt |
30436172 |
T |
|
| Q |
617 |
aaaccatttttgtttattttacagtgtttgcctaatctaattggctaattgtttggtggttatttttgagtagtgtgcaacaacctcagnnnnnnnctca |
716 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
30436173 |
aaaccatttttgtttattttacagtgtttgcctaatctaattggctaattgtttggtggttattttttagtagtgtgcaacaacctcagtttttttctca |
30436272 |
T |
|
| Q |
717 |
catgaccaagtgattaattgcaaacatcactaccttttccagcgctgtattcgagcaatgcaaaatcatgttctcttaacattttgttttgtgcagaaaa |
816 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
30436273 |
catgaccaagtgattaattgcaaacatcactaccttttccagcgctgtattcgagcaatacaaaatcatgttctcttaacattttgttttgttcagaaaa |
30436372 |
T |
|
| Q |
817 |
tgctactgccagtctgccacatcaatactcc--cacgaggagtcgctcaaagaaattttgaagtccacatggctcgcaagcacgactctatcttggttgc |
914 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
30436373 |
tgctactgccagtctgccacatcaatactcccacacgaggagtcgctcaaagaaattttgaaatccacatggctcgcacgcacgactctatcttggttgc |
30436472 |
T |
|
| Q |
915 |
agctgaaattgggttattgccagatttccacaagaataagagttctgaagctgcaggatgttcggtaaaaagag-atca-gagccgataagtgtgacgga |
1012 |
Q |
| |
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| |||||||| |||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||| |||| |||| ||||||||||||| |
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| T |
30436473 |
atctgaaatt-ggttattgccagttttccacaaga--tagag-tctgaagctgcaggatgttcggtaaaaagagaatcaggagctgataagtgtgacgac |
30436568 |
T |
|
| Q |
1013 |
tcacaaacatttatc |
1027 |
Q |
| |
|
||||||||||||||| |
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|
| T |
30436569 |
tcacaaacatttatc |
30436583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 9 - 256
Target Start/End: Original strand, 30435566 - 30435812
Alignment:
| Q |
9 |
ccaccctcgctgctgctatcccaaggaaagtgacaccgaattcaatctatctcatccttaacagaatcatcaaatccaaccgatacaaactggccagcct |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30435566 |
ccaccctcgctgctgctatcccaaggaaagcgacaccgaattcaatctatctcatccttaacagaatcatcaaatccaaccgatacaaactggccagcct |
30435665 |
T |
|
| Q |
109 |
catacatcatccgattaagttagttcaacaattattcattcatttaatcaaccatataagttnnnnnnnnntgcaataggggctgggaatcaaaagaagc |
208 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
30435666 |
catgcatcatccgattaagttagttcaacaattattcattcatttaatcaaccatataagtt-aaaaaaaatgcaataggggctgggaatcaaaagaagc |
30435764 |
T |
|
| Q |
209 |
ataaaggaattagaggactgactcaataaagttaccattgattcactg |
256 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
30435765 |
ataaaggaattagaggactgactcaatatagttaccattgattcactg |
30435812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 3e-42; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 3e-42
Query Start/End: Original strand, 497 - 617
Target Start/End: Original strand, 47767234 - 47767354
Alignment:
| Q |
497 |
ttgtggttgacaccggtagatggagatgtatgtgaattgggagttgatgcttattcttactccatgattctcttctcttctcaatctcaatctaaccctt |
596 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
47767234 |
ttgtggttgacaccggtagatggagatatatgtgaatcgggagatgatgcttattatgactccatgattctcttctcttctcaatctcaatctaaccctt |
47767333 |
T |
|
| Q |
597 |
gctgttctgatgtctcttgta |
617 |
Q |
| |
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| ||||||||| ||| ||||| |
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| T |
47767334 |
gttgttctgatttctattgta |
47767354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 199 - 254
Target Start/End: Original strand, 47765315 - 47765370
Alignment:
| Q |
199 |
caaaagaagcataaaggaattagaggactgactcaataaagttaccattgattcac |
254 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||| |
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|
| T |
47765315 |
caaaagaagcataaaggaattataggactgactcaagaaagttatcattgattcac |
47765370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 317 - 391
Target Start/End: Original strand, 47767085 - 47767158
Alignment:
| Q |
317 |
gtatcgctaaaattgaaatacggatattgaatttcgatttaattttaccttgagttggaatgcatgactgattca |
391 |
Q |
| |
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||||| |||||||||||||||| ||| ||||||| | || ||||||||||||||||||||| ||||||||||||| |
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|
| T |
47767085 |
gtatcactaaaattgaaatacg-atactgaattttgtttaaattttaccttgagttggaatccatgactgattca |
47767158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 325 - 421
Target Start/End: Original strand, 26839182 - 26839279
Alignment:
| Q |
325 |
aaaattgaaatacggatattgaatttcgatt-taattttaccttgagttggaatgcatgactgattcagttgtgttgccagagagatggaaatcgtct |
421 |
Q |
| |
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|||| |||||| |||||| ||||||| |||| || ||||||||||||| ||||| ||||||||||||||| | ||||| ||||||| |||| |||| |
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| T |
26839182 |
aaaagtgaaattcggatactgaattttgattatagttttaccttgagtcggaatcggtgactgattcagttgcggtgccacagagatgcaaatggtct |
26839279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 356 - 421
Target Start/End: Original strand, 50974309 - 50974374
Alignment:
| Q |
356 |
taattttaccttgagttggaatgcatgactgattcagttgtgttgccagagagatggaaatcgtct |
421 |
Q |
| |
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|||||||||||||||| ||||| ||||||||||||||| | ||||||||||||| |||| |||| |
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| T |
50974309 |
taattttaccttgagtcggaatcggtgactgattcagttgcggtgccagagagatgcaaatggtct |
50974374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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