View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1884R-Insertion-2 (Length: 1060)
Name: NF1884R-Insertion-2
Description: NF1884R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1884R-Insertion-2 |
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Alignment Details
Target: chr1 (Bit Score: 663; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 663; E-Value: 0
Query Start/End: Original strand, 8 - 729
Target Start/End: Complemental strand, 49818834 - 49818113
Alignment:
| Q |
8 |
aatactaaagtctaaaggtgtggtatgccaatagtactcctgtgatagtgcctagtcatgcgacaataatttcctacgaatgaatgagggtcattatttt |
107 |
Q |
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| T |
49818834 |
aatactaaagtctaaaggtgtggtatgccaatagtactcctgtgatagtgcctagtcatgcgacaataatttcctacgaatgaatgagggtcattatttt |
49818735 |
T |
|
| Q |
108 |
ggctatgtatattgtccttaaactgaccctacatcatgtatcacataatgctaactaaggacctaatgtttccaacacttaggacagcataaatgcctaa |
207 |
Q |
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| T |
49818734 |
ggctatgtatattgtccttaaactgaccctacatcatgtatcacataatgctaactaaggacctaatgtttccagtacttaggacagcataaatgcctaa |
49818635 |
T |
|
| Q |
208 |
gaaattgttcaaactttaacaagttagaaaaataattgcaaagaaatgtaccaggacgattgtctacatccggtaattagtttaatggtaatcaaatatg |
307 |
Q |
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| T |
49818634 |
gaaattgttcaaactttaacaagttagaaaaataattgcaaagaaatgtaccaggacgattgtctacatccggtaattagtttaatggtaatcaaatatg |
49818535 |
T |
|
| Q |
308 |
tcattaacacaagcagtttgagcatgttctttaatttacagttaaataataataacatagtgagagtaatttacattggtgcaatcattaatacgtactt |
407 |
Q |
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| T |
49818534 |
tcattaacacaagtagtttgagcatgttctttaatttacagttaaataataataacatagtgagagtaatttacattggtgcaatcattaatacgtactt |
49818435 |
T |
|
| Q |
408 |
ataaagtcataagattttctgatttcctttttcaataatggtgagaacaagtaaagagggattttctgaagtatatccattaaaagatctaaaccaacaa |
507 |
Q |
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| T |
49818434 |
ataaagtcataagattttctcatttcctttttcaataatggtgagaacaagtaaagagggattttctgaagtatatccattaaaagatctaaaccatcaa |
49818335 |
T |
|
| Q |
508 |
tttttgaagtccctcatatcctgtacaagtcccgatattgatttaggtctgcgattgttgggagcaagaaaattattgcttcagagaaatttggaattta |
607 |
Q |
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| T |
49818334 |
tttttgaagtccctcatatcctgtacaagtcccgatattgatttaggtctgcgattgttgggagcaagaaaattattgcttcagagaaatttggaattta |
49818235 |
T |
|
| Q |
608 |
tttaatttaggtagtctactgtagtccttgttaattt-----atttaatgttaattctttgattatttacaaacaaattgtacatttagatgatgcaaga |
702 |
Q |
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| T |
49818234 |
tttaatttaggtagtc-----tagtccttgttaatttatttaatttaatgttaattctttgattatttacaaacaaattgtacatttagatgatgcaaga |
49818140 |
T |
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| Q |
703 |
ctattgaatgtgaattattaacacata |
729 |
Q |
| |
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|||||||||||||| |||||||||||| |
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| T |
49818139 |
ctattgaatgtgaactattaacacata |
49818113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 893 - 958
Target Start/End: Complemental strand, 49817953 - 49817887
Alignment:
| Q |
893 |
ggttcatgattagattcatggtcttgcatgatctgaaaatcgatg-tgatccaccttataggtatta |
958 |
Q |
| |
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| T |
49817953 |
ggttcatgattagattcatggttttgcatgatctgaaaatcgatgttggtccaccttataggtatta |
49817887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 793 - 828
Target Start/End: Complemental strand, 49818052 - 49818017
Alignment:
| Q |
793 |
aatatgaacttcataccatattcatcaaccttcaag |
828 |
Q |
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| T |
49818052 |
aatatgaacttcataccatattcatcaaccttcaag |
49818017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 638 - 711
Target Start/End: Complemental strand, 24124509 - 24124437
Alignment:
| Q |
638 |
ttaatttatttaatgttaattctttgattatttacaaacaaattgtacatttagatgatgcaagactattgaat |
711 |
Q |
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|||||||||| ||| |||| |||||||||||| |||| ||| | |||||||||| ||||||||||||||||| |
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| T |
24124509 |
ttaatttattcaattttaaccctttgattattt-caaagaaactagacatttagatcatgcaagactattgaat |
24124437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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