View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1884R-Insertion-4 (Length: 945)
Name: NF1884R-Insertion-4
Description: NF1884R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1884R-Insertion-4 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 486; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 420 - 945
Target Start/End: Original strand, 28240653 - 28241183
Alignment:
| Q |
420 |
tagaagggatgt-gcgaaaccagttatctagaaatttgttcttggtgctgtccttgatcggatttggtcacctaaaaatgagtttgcctttgataacaaa |
518 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |
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| T |
28240653 |
tagaagggatgttgcgaaaccagttatctagaaatttgttcttggtgctgtccttgatcgtatttggtcacctcaaaatgagtttgcctttgataacaaa |
28240752 |
T |
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| Q |
519 |
actcataccagtggcagcataattcggcaagtggagagtaaatttggtcaatgagatccacgttactatggtggaatgcactcctataagccctcaacta |
618 |
Q |
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| T |
28240753 |
actcataccagtggcagcataatttggcaagtggagagtaaatttggtcaatgagatccacgttactatggtggaatgcactcctataagccctcaacta |
28240852 |
T |
|
| Q |
619 |
gaagtccataaggtgaatcaattttttggttgcag----gccctagatggaatgattaaaattaattgtgatgcttttgtgtcttgtaaggagttccggt |
714 |
Q |
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| T |
28240853 |
gcagtccataaggtgaatcaattttttggttgcagaccggccctagatggaatgattaaaattaattgtgatgcttttgtgtcttgtaaggagttccggt |
28240952 |
T |
|
| Q |
715 |
agcatgtggaggcattgctagagtctagagatgcaaatggttgtttcctctattcaagcagaactctgggttattgcttgctgtcagtgtcattaacaat |
814 |
Q |
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| T |
28240953 |
agcatgtggaggcattgctagagtctagagatgcaaatggttgtttcctctattcaagcagaactctgggttattgcttgctgtcagtgtcattaacaat |
28241052 |
T |
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| Q |
815 |
tgatgtgttcagtcccacgattgatttgggattgttcaaagaattgaagagaggacaaaaagttttgatacctctcatattaactatgttcttagagagg |
914 |
Q |
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| T |
28241053 |
tgatgtgttcagtcccacgattgatttgggattgttcaaagaattgaagagaggacaaaaagttctgatacctctcatattaactatgttcttagagagg |
28241152 |
T |
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| Q |
915 |
ctgacgaaattgcagatagtcttgcaaagtt |
945 |
Q |
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| T |
28241153 |
ctgacgaaattgcagatagtcttgcaaagtt |
28241183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 9 - 411
Target Start/End: Original strand, 28240060 - 28240461
Alignment:
| Q |
9 |
agatgttcggtattttctcaattactttaggataatagttttagccatataatgctctccacaatattacgaaccttaattaggtgttcatgcattgaaa |
108 |
Q |
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| T |
28240060 |
agatgttcagtattttctcaattactttaggataatagttttagcaatataatgctctccacaatattacgaaccttaattgggtgttcatgcattgaaa |
28240159 |
T |
|
| Q |
109 |
tctggcgaggaacaaaaattacacttgacctatgtagcaccgacacttcaagttgaaggcgtgtccaatgcctgacactgacatgtaattacatctaatt |
208 |
Q |
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||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
28240160 |
tctggcgaggaacaaaaattatacttgatctatgtagcaccgacacttcaagttgaaggcgtgtccaatgcctgacactcacaagtaattacatctaatt |
28240259 |
T |
|
| Q |
209 |
actgctattttcacaatttataattggtgtttacgtgacagtgtcaatgcttcatagcatttgaccacaaagattacctttaaatagggactttgtagtt |
308 |
Q |
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| T |
28240260 |
actgctattttcacaatttataattggtgtttacgtgccagtgtcaatgcttcatagcatttgaccacaaagattgcctttaaatagggactttgtagtt |
28240359 |
T |
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| Q |
309 |
actttcccatcagaagttctagtcgtgacgcaaacttaatattttcatgcgaaaattcaatgttggatagcaaactcacaatcacgggtatgaccttttg |
408 |
Q |
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| T |
28240360 |
actttcccatcagaagttctagtcgtgaagcaaacttaatattttcatgcaaaaattcagtgttggatagcaaactcacaatcac-ggtatgaccttttg |
28240458 |
T |
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| Q |
409 |
tgc |
411 |
Q |
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||| |
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| T |
28240459 |
tgc |
28240461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 166
Target Start/End: Complemental strand, 21158182 - 21158113
Alignment:
| Q |
98 |
atgcattgaaatctggcgaggaacaaaaatt-acacttgacctatgtagcaccgacacttcaagttgaag |
166 |
Q |
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| T |
21158182 |
atgcattgaaatctggtgaggaacacaaatttacatttgacctatgtaacaccaacacttcaaattgaag |
21158113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 149
Target Start/End: Original strand, 28232548 - 28232602
Alignment:
| Q |
95 |
ttcatgcattgaaatctggcgaggaacaaaaattacacttgacctatgtagcacc |
149 |
Q |
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| T |
28232548 |
ttcatgcattaaaatctggcaaggaacaaaaattatatttgacctacgtagcacc |
28232602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 178
Target Start/End: Original strand, 1637954 - 1638033
Alignment:
| Q |
98 |
atgcattgaaatctggcgaggaacaaaaattacacttgacctatgtagcaccgacacttcaagttgaaggcgtgtccaatg |
178 |
Q |
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| T |
1637954 |
atgcattgaaatctgg-gaggaacacaaattacatttgacctataaaacaccgacactttaaattgaagacgtatccaatg |
1638033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 176
Target Start/End: Original strand, 43163938 - 43163975
Alignment:
| Q |
139 |
tatgtagcaccgacacttcaagttgaaggcgtgtccaa |
176 |
Q |
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| T |
43163938 |
tatgtagcaccgacacttcaagttgaagttgtgtccaa |
43163975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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