View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1884_high_2 (Length: 308)
Name: NF1884_high_2
Description: NF1884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1884_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 18 - 295
Target Start/End: Original strand, 44997544 - 44997820
Alignment:
| Q |
18 |
aaatacacatcttcaacagtcatctatgcaagattagatacatatgttagaaagnnnnnnnnntacagaattgaaagaatcacaatcaaatcaaaatatg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44997544 |
aaatacacatcttcaacagtcatctatgcaagattagatacatatgttagaaa-aaaaaaatatacagaattgaaagaatcacaatcaaatcaaaatatg |
44997642 |
T |
|
| Q |
118 |
tatacaagacaataataatatatctggtacatcattttggttttataaatttttgttgtgtcacactacaatttaagtaaagtaaaaatgttatttacct |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44997643 |
tatacaagacaataataatatatctggtacatcattttggttttataaatttttgttgtgtcacactacaatttaagtaaagtaaaaatgttatttacct |
44997742 |
T |
|
| Q |
218 |
tgtcttcaaattgttccatgaaaatatccattccccttacaaaataagtaatgttttcatgagtcaaaacaacaccct |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44997743 |
tgtcttcaaattgttccatgaaaatatccattccccttacaaaataagtaatgttttcatgagtcaaaacaacaccct |
44997820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 214 - 257
Target Start/End: Complemental strand, 38766012 - 38765969
Alignment:
| Q |
214 |
accttgtcttcaaattgttccatgaaaatatccattccccttac |
257 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
38766012 |
accttgtcctcaaattgttccatgaaaagatccattcctcttac |
38765969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University