View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1884_low_1 (Length: 450)
Name: NF1884_low_1
Description: NF1884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1884_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 12 - 432
Target Start/End: Complemental strand, 16463623 - 16463203
Alignment:
| Q |
12 |
atgagatgaactgcatataggaacacttggaataaagttaccttgagaatgttttcagtaaggcttgaaggacctcttgatgagaaagatgcaacaatcg |
111 |
Q |
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| T |
16463623 |
atgaaatgaactgcatataggaacacttggaataaagttaccttgagaatgttttcagtaaggcttgaaggacctcttgatgagaaagatgcaacaatag |
16463524 |
T |
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| Q |
112 |
gtgcaggcctgtatctagaaactaccgttgttggaagaattgtcgcagttggtttcctgtaacagaacatgataggttgagcatatcaatggtatattat |
211 |
Q |
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| T |
16463523 |
gtgcaggcctgtatctagaaactactgttgttggaagaattgttgcagttggtttcctgtaacagaacatgataggttgagcatatctatggtatattat |
16463424 |
T |
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| Q |
212 |
ttttcaactgtttccaatcaacttacagatagaattataataatttgaaccattttannnnnnnattattcttcctttatacaaagatgtttaaaaatca |
311 |
Q |
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| T |
16463423 |
ttttcaactgtttccaatcaacttacagatagaattataataatttgaaccattttatttttttattattcttcctttatacaaagatgtttaaaaatca |
16463324 |
T |
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| Q |
312 |
cccttaggcttttgcattcaataagtgttttaaattgtgatggcaatcgtgcgattttagaagtctttgcaactgcatcttgaccacaaaatattgtaat |
411 |
Q |
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| T |
16463323 |
cccttaggcttttgcattcaataagttttttatattgtgatggcaatcgtgcgattttagaagtctttgcaactgcatcttgaccacaaaatattgtaat |
16463224 |
T |
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| Q |
412 |
tgcgatcgtgattgtaactta |
432 |
Q |
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| T |
16463223 |
tgcgatcgtgattgtaactta |
16463203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 49 - 178
Target Start/End: Complemental strand, 16493609 - 16493480
Alignment:
| Q |
49 |
ttaccttgagaatgttttcagtaaggcttgaaggacctcttgatgagaaagatgcaacaatcggtgcaggcctgtatctagaaactaccgttgttggaag |
148 |
Q |
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||||||||||||||||||| || ||||||||||| ||||| |||||||| ||||| ||||| ||||||||||| ||||||| || | | |||||||||| |
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| T |
16493609 |
ttaccttgagaatgttttctgttaggcttgaagggcctctagatgagaatgatgccacaattggtgcaggcctatatctaggaatttctattgttggaag |
16493510 |
T |
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| Q |
149 |
aattgtcgcagttggtttcctgtaacagaa |
178 |
Q |
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| T |
16493509 |
aattgttgcagttggtttcctgtaacagaa |
16493480 |
T |
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