View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1884_low_3 (Length: 302)

Name: NF1884_low_3
Description: NF1884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1884_low_3
NF1884_low_3
[»] chr6 (8 HSPs)
chr6 (108-288)||(32574678-32574858)
chr6 (34-103)||(32458037-32458104)
chr6 (27-91)||(20845402-20845465)
chr6 (27-84)||(31705575-31705631)
chr6 (27-84)||(31804603-31804659)
chr6 (28-84)||(5146337-5146392)
chr6 (28-84)||(12481034-12481089)
chr6 (28-84)||(15589780-15589835)
[»] chr8 (24 HSPs)
chr8 (25-84)||(7281960-7282018)
chr8 (34-100)||(5328343-5328408)
chr8 (27-84)||(5457460-5457516)
chr8 (25-84)||(13570430-13570488)
chr8 (27-84)||(38545479-38545535)
chr8 (25-84)||(39067353-39067411)
chr8 (34-101)||(44295712-44295778)
chr8 (25-83)||(26673446-26673503)
chr8 (29-91)||(31874455-31874516)
chr8 (34-84)||(41996939-41996988)
chr8 (38-84)||(45310899-45310944)
chr8 (26-100)||(589001-589076)
chr8 (26-100)||(624846-624921)
chr8 (27-84)||(2234133-2234189)
chr8 (27-84)||(8054477-8054533)
chr8 (34-91)||(9993062-9993118)
chr8 (42-79)||(16644734-16644771)
chr8 (34-91)||(32413186-32413242)
chr8 (27-84)||(37613046-37613102)
chr8 (28-80)||(7579522-7579573)
chr8 (28-84)||(26912038-26912093)
chr8 (28-84)||(28296778-28296833)
chr8 (28-84)||(31202859-31202914)
chr8 (36-84)||(31712743-31712790)
[»] chr3 (16 HSPs)
chr3 (27-101)||(45664610-45664684)
chr3 (27-84)||(25111832-25111888)
chr3 (27-91)||(3961438-3961501)
chr3 (28-84)||(45047908-45047963)
chr3 (25-84)||(42167724-42167782)
chr3 (33-84)||(48652112-48652162)
chr3 (26-84)||(43839186-43839243)
chr3 (28-101)||(1074540-1074612)
chr3 (27-94)||(7869101-7869172)
chr3 (38-91)||(27831498-27831550)
chr3 (34-91)||(43030079-43030135)
chr3 (27-84)||(48401502-48401558)
chr3 (27-84)||(53155093-53155149)
chr3 (28-84)||(33637805-33637860)
chr3 (28-84)||(36623926-36623981)
chr3 (28-84)||(49627767-49627822)
[»] chr2 (15 HSPs)
chr2 (25-84)||(36868416-36868474)
chr2 (34-84)||(11931268-11931317)
chr2 (35-82)||(23256302-23256348)
chr2 (38-84)||(7581762-7581807)
chr2 (41-87)||(28413424-28413469)
chr2 (34-91)||(3390819-3390875)
chr2 (34-91)||(9207018-9207074)
chr2 (27-84)||(9689640-9689696)
chr2 (27-84)||(13113421-13113477)
chr2 (27-84)||(15920263-15920319)
chr2 (27-84)||(19904899-19904955)
chr2 (27-84)||(25622713-25622769)
chr2 (34-91)||(25771841-25771897)
chr2 (36-84)||(4878403-4878450)
chr2 (28-84)||(16136489-16136544)
[»] chr7 (19 HSPs)
chr7 (27-84)||(23732063-23732119)
chr7 (27-84)||(26017327-26017383)
chr7 (26-101)||(134797-134871)
chr7 (28-101)||(10574776-10574848)
chr7 (27-84)||(37399987-37400043)
chr7 (27-64)||(40016568-40016605)
chr7 (28-84)||(43847384-43847439)
chr7 (28-84)||(44482533-44482588)
chr7 (36-102)||(8319713-8319779)
chr7 (26-84)||(7986280-7986337)
chr7 (34-84)||(30992493-30992542)
chr7 (34-84)||(43806819-43806868)
chr7 (27-91)||(47750123-47750190)
chr7 (28-84)||(2623003-2623058)
chr7 (28-80)||(17508863-17508914)
chr7 (28-80)||(17544300-17544351)
chr7 (28-84)||(24319878-24319933)
chr7 (28-84)||(46025710-46025765)
chr7 (28-84)||(48304047-48304102)
[»] chr5 (12 HSPs)
chr5 (34-102)||(6886829-6886896)
chr5 (25-84)||(9196686-9196744)
chr5 (34-84)||(5378698-5378747)
chr5 (34-84)||(39308422-39308471)
chr5 (27-91)||(6281454-6281518)
chr5 (27-84)||(11734500-11734556)
chr5 (27-84)||(17218112-17218168)
chr5 (34-91)||(31646225-31646281)
chr5 (27-84)||(32309906-32309962)
chr5 (27-84)||(41358423-41358479)
chr5 (25-82)||(43415613-43415669)
chr5 (28-84)||(39179500-39179555)
[»] scaffold0090 (1 HSPs)
scaffold0090 (25-84)||(11223-11281)
[»] chr1 (14 HSPs)
chr1 (25-84)||(17347983-17348041)
chr1 (25-84)||(43504205-43504263)
chr1 (34-88)||(23257484-23257537)
chr1 (34-98)||(15276101-15276164)
chr1 (27-102)||(13999352-13999425)
chr1 (27-101)||(51418394-51418468)
chr1 (27-89)||(6212578-6212639)
chr1 (34-84)||(49652231-49652280)
chr1 (27-100)||(900440-900512)
chr1 (27-84)||(26771495-26771551)
chr1 (34-91)||(38644459-38644515)
chr1 (27-75)||(423956-424003)
chr1 (36-84)||(12967402-12967449)
chr1 (27-102)||(25032739-25032814)
[»] chr4 (20 HSPs)
chr4 (26-84)||(6408833-6408890)
chr4 (33-84)||(7579448-7579501)
chr4 (34-84)||(34668582-34668631)
chr4 (27-84)||(46716563-46716619)
chr4 (27-84)||(56250559-56250616)
chr4 (28-84)||(20887412-20887467)
chr4 (34-101)||(4634679-4634745)
chr4 (34-101)||(9662249-9662315)
chr4 (27-101)||(14542164-14542237)
chr4 (42-84)||(29576790-29576831)
chr4 (38-84)||(30416296-30416341)
chr4 (34-84)||(44374944-44374993)
chr4 (27-84)||(37431566-37431622)
chr4 (34-91)||(41486970-41487026)
chr4 (28-84)||(393929-393984)
chr4 (28-84)||(18502497-18502552)
chr4 (28-84)||(19745801-19745856)
chr4 (28-84)||(19793950-19794005)
chr4 (28-84)||(24100544-24100599)
chr4 (34-94)||(53903975-53904034)
[»] scaffold0536 (1 HSPs)
scaffold0536 (25-84)||(3303-3361)
[»] scaffold0722 (1 HSPs)
scaffold0722 (26-84)||(5195-5252)
[»] scaffold0321 (1 HSPs)
scaffold0321 (27-81)||(6787-6841)
[»] scaffold0432 (1 HSPs)
scaffold0432 (27-84)||(2103-2159)
[»] scaffold0312 (1 HSPs)
scaffold0312 (27-75)||(6546-6593)


Alignment Details
Target: chr6 (Bit Score: 116; Significance: 5e-59; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 108 - 288
Target Start/End: Original strand, 32574678 - 32574858
Alignment:
Q  108 taaaacgcaacaacacttgttagcatttgtcaataattatctagttctaccctttaaggactattttaatttaannnnnnncaatcaagacaactcatca 207  Q
    |||||||| ||||||||||||| ||||| |||| ||||||| ||||||||  ||||||||||||||||||||||       |||||||||||||||||||    
T  32574678 taaaacgcgacaacacttgttatcatttctcaagaattatcaagttctacagtttaaggactattttaatttaatttttttcaatcaagacaactcatca 32574777  T
Q  208 atgtgaaaatatttcgtgtaacactatctctcagagttctcgatctcgatctcgctaattcgtcatttctcttgcttcatc 288  Q
    |||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  32574778 atgtgaaaatattttgtgtaacaccatctcccagagttctcgatctcgatctcgctcattcgtcatttctcttgcttcatc 32574858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 103
Target Start/End: Original strand, 32458037 - 32458104
Alignment:
Q  34 attatatcgatatactttatcaatttaaaatgaatgaatatcatttattttatcaaaagaataaaaaatt 103  Q
    |||||||||||  |||||||||||||||| ||||||||||| ||||||||| |||||| |||||||||||    
T  32458037 attatatcgatgcactttatcaatttaaa-tgaatgaatatgatttattttgtcaaaa-aataaaaaatt 32458104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 20845402 - 20845465
Alignment:
Q  27 aatttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttattttatcaaaa 91  Q
    ||||| |||||||||||| |||| ||||||||| || |||||||||||| |||||||| ||||||    
T  20845402 aatttgtattatatcgatgtactatatcaatttgaa-tgaatgaatatcttttattttgtcaaaa 20845465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 31705575 - 31705631
Alignment:
Q  27 aatttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    ||||| |||| ||||||| |||| ||||||||| ||||||||||||||| ||||||||    
T  31705575 aatttgtattgtatcgatgtactctatcaattt-aaatgaatgaatatcgtttatttt 31705631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 31804603 - 31804659
Alignment:
Q  27 aatttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    ||||| |||||||||||| |||| ||||||||| |||||||| |||||| ||||||||    
T  31804603 aatttttattatatcgatgtactctatcaattt-aaatgaataaatatcgtttatttt 31804659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 5146337 - 5146392
Alignment:
Q  28 atttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    |||| |||||||||||| |||| |||||||||  |||||||||||||| ||||||||    
T  5146337 atttgtattatatcgatgtactctatcaattt-gaatgaatgaatatcgtttatttt 5146392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 12481089 - 12481034
Alignment:
Q  28 atttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    |||| |||| ||||||| ||||||||||||||  |||||||||||||| ||||||||    
T  12481089 atttgtattgtatcgatgtactttatcaattt-gaatgaatgaatatcgtttatttt 12481034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 15589835 - 15589780
Alignment:
Q  28 atttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    ||||||||| ||||||| |||| ||||||||| || |||||||||||| ||||||||    
T  15589835 atttatattgtatcgatgtactctatcaatttgaa-tgaatgaatatcgtttatttt 15589780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 84
Target Start/End: Original strand, 7281960 - 7282018
Alignment:
Q  25 taaatttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    ||||||||||||||||||||||||| ||| || |||||||||||||||||| ||||||||    
T  7281960 taaatttatattatatcgatatactctat-aaattaaaatgaatgaatatcgtttatttt 7282018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 34 - 100
Target Start/End: Original strand, 5328343 - 5328408
Alignment:
Q  34 attatatcgatatactttatcaatttaaaatgaatgaatatcatttattttatcaaaagaataaaaa 100  Q
    ||||||||||| |||| ||||||||||||| |||||||||||||||||||| |||||| || |||||    
T  5328343 attatatcgatgtactctatcaatttaaaa-gaatgaatatcatttattttgtcaaaaaaaaaaaaa 5328408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 5457460 - 5457516
Alignment:
Q  27 aatttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    |||||||||||||||||| |||| |||||||||  |||||||||||||||||||||||    
T  5457460 aatttatattatatcgatgtactctatcaattt-gaatgaatgaatatcatttatttt 5457516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 84
Target Start/End: Complemental strand, 13570488 - 13570430
Alignment:
Q  25 taaatttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    ||||||| |||| |||||||||||| ||||||||| ||||||||||||||| ||||||||    
T  13570488 taaatttgtattgtatcgatatactctatcaattt-aaatgaatgaatatcgtttatttt 13570430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 38545535 - 38545479
Alignment:
Q  27 aatttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    |||||||||| |||||||||||| |||||||||  |||||||||||||| ||||||||    
T  38545535 aatttatattgtatcgatatactctatcaattt-gaatgaatgaatatcgtttatttt 38545479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 84
Target Start/End: Complemental strand, 39067411 - 39067353
Alignment:
Q  25 taaatttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    ||||||| |||  |||||||||||| ||||||||||||| ||||||||||| ||||||||    
T  39067411 taaatttgtatagtatcgatatactctatcaatttaaaa-gaatgaatatcgtttatttt 39067353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 34 - 101
Target Start/End: Original strand, 44295712 - 44295778
Alignment:
Q  34 attatatcgatatactttatcaatttaaaatgaatgaatatcatttattttatcaaaagaataaaaaa 101  Q
    ||||||||||| |||| ||||||||| || |||||||||||| |||||||| |||||| || ||||||    
T  44295712 attatatcgatgtactctatcaatttgaa-tgaatgaatatcttttattttgtcaaaaaaaaaaaaaa 44295778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 26673503 - 26673446
Alignment:
Q  25 taaatttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttattt 83  Q
    ||||||| |||  |||||||||||| ||||||||| ||||||||| |||||||||||||    
T  26673503 taaatttgtatcgtatcgatatactctatcaattt-aaatgaatggatatcatttattt 26673446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 91
Target Start/End: Original strand, 31874455 - 31874516
Alignment:
Q  29 tttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttattttatcaaaa 91  Q
    |||| ||||||||||| |||| ||||||||| || |||||||||||| |||||||| ||||||    
T  31874455 tttacattatatcgatgtactctatcaatttgaa-tgaatgaatatcttttattttgtcaaaa 31874516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 84
Target Start/End: Original strand, 41996939 - 41996988
Alignment:
Q  34 attatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    ||||||||||| ||||  ||||||||||| |||||||||||||||||||||    
T  41996939 attatatcgatgtactcgatcaatttaaa-tgaatgaatatcatttatttt 41996988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 84
Target Start/End: Complemental strand, 45310944 - 45310899
Alignment:
Q  38 tatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    ||||||||||||||||||||||  ||||||| |||||||||||||||    
T  45310944 tatcgatatactttatcaattt-gaatgaattaatatcatttatttt 45310899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 100
Target Start/End: Complemental strand, 589076 - 589001
Alignment:
Q  26 aaatttatattatatcgatatactttatcaatttaaaatgaatga--atatcatttattttatcaaaagaataaaaa 100  Q
    |||||| |||||||||||| || |||||||||||  |||||||||  ||||| |||||||| ||||||||| |||||    
T  589076 aaatttgtattatatcgatgtattttatcaattt-gaatgaatgaatatatcgtttattttgtcaaaagaaaaaaaa 589001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 100
Target Start/End: Original strand, 624846 - 624921
Alignment:
Q  26 aaatttatattatatcgatatactttatcaatttaaaatgaatga--atatcatttattttatcaaaagaataaaaa 100  Q
    |||||| |||||||||||| || |||||||||||  |||||||||  ||||| |||||||| ||||||||| |||||    
T  624846 aaatttgtattatatcgatgtattttatcaattt-gaatgaatgaatatatcgtttattttgtcaaaagaaaaaaaa 624921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 2234189 - 2234133
Alignment:
Q  27 aatttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    ||||| |||||||||||| |||| |||||||||  |||||||||||||| ||||||||    
T  2234189 aatttgtattatatcgatgtactctatcaattt-gaatgaatgaatatcgtttatttt 2234133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 8054533 - 8054477
Alignment:
Q  27 aatttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    ||||| |||||||||||| || | ||||||||| || |||||||||||||||||||||    
T  8054533 aatttgtattatatcgatgtattctatcaatttgaa-tgaatgaatatcatttatttt 8054477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 91
Target Start/End: Original strand, 9993062 - 9993118
Alignment:
Q  34 attatatcgatatactttatcaatttaaaatgaatgaatatcatttattttatcaaaa 91  Q
    ||||||||||| |||| ||||||||| || |||||||||||| |||||||| ||||||    
T  9993062 attatatcgatgtactctatcaatttgaa-tgaatgaatatcttttattttgtcaaaa 9993118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 79
Target Start/End: Original strand, 16644734 - 16644771
Alignment:
Q  42 gatatactttatcaatttaaaatgaatgaatatcattt 79  Q
    |||||||| ||||||||| |||||||||||||||||||    
T  16644734 gatatactctatcaatttgaaatgaatgaatatcattt 16644771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 91
Target Start/End: Original strand, 32413186 - 32413242
Alignment:
Q  34 attatatcgatatactttatcaatttaaaatgaatgaatatcatttattttatcaaaa 91  Q
    |||||||| || |||| ||||||||| || ||||||||||||||||||||||| ||||    
T  32413186 attatatcaatgtactctatcaatttgaa-tgaatgaatatcatttattttataaaaa 32413242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 37613046 - 37613102
Alignment:
Q  27 aatttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    ||||| |||| |||||||||||| |||||||||  |||||||||||||| ||||||||    
T  37613046 aatttgtattgtatcgatatactctatcaattt-gaatgaatgaatatcgtttatttt 37613102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 7579573 - 7579522
Alignment:
Q  28 atttatattatatcgatatactttatcaatttaaaatgaatgaatatcattta 80  Q
    ||||||||| ||||||| |||| ||||||||| || |||||||||||||||||    
T  7579573 atttatattgtatcgatgtactctatcaatttgaa-tgaatgaatatcattta 7579522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 26912038 - 26912093
Alignment:
Q  28 atttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    ||||||||| ||| | | |||||||||||||||||| ||||||||||| ||||||||    
T  26912038 atttatattgtattgttgtactttatcaatttaaaa-gaatgaatatcgtttatttt 26912093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 28296833 - 28296778
Alignment:
Q  28 atttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    |||| |||| ||||||| |||| ||||||||| || |||||||||||||||||||||    
T  28296833 atttgtattgtatcgatgtactctatcaatttgaa-tgaatgaatatcatttatttt 28296778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 31202859 - 31202914
Alignment:
Q  28 atttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    |||| |||||||||||| |||| |||||||||  |||||||||||||| ||||||||    
T  31202859 atttgtattatatcgatgtactctatcaattt-gaatgaatgaatatcgtttatttt 31202914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 31712790 - 31712743
Alignment:
Q  36 tatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    ||||||||| |||| ||||||||| || |||||||||||||||||||||    
T  31712790 tatatcgatgtactctatcaatttgaa-tgaatgaatatcatttatttt 31712743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 101
Target Start/End: Original strand, 45664610 - 45664684
Alignment:
Q  27 aatttatattatatcgatatactttatcaatttaaaatgaatgaatatcattta-ttttatcaaaagaataaaaaa 101  Q
    |||||| ||||||||||| |||| ||||||||| |||||||||||||||||||| ||||||||||| || ||||||    
T  45664610 aatttacattatatcgatgtactctatcaattt-aaatgaatgaatatcatttatttttatcaaaaaaaaaaaaaa 45664684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 25111888 - 25111832
Alignment:
Q  27 aatttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    |||||||||||||||||| |||| ||| ||||| || |||||||||||||||||||||    
T  25111888 aatttatattatatcgatgtactctattaatttgaa-tgaatgaatatcatttatttt 25111832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 91
Target Start/End: Complemental strand, 3961501 - 3961438
Alignment:
Q  27 aatttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttattttatcaaaa 91  Q
    ||||| |||| ||||||||||||||||||||||  ||| |||||||||| |||||||||| ||||    
T  3961501 aatttgtattgtatcgatatactttatcaattt-gaataaatgaatatcgtttattttataaaaa 3961438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 45047908 - 45047963
Alignment:
Q  28 atttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    |||| |||| |||||||||||| ||||||||| || |||||||||||||||||||||    
T  45047908 atttgtattgtatcgatatactctatcaatttgaa-tgaatgaatatcatttatttt 45047963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 84
Target Start/End: Complemental strand, 42167782 - 42167724
Alignment:
Q  25 taaatttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    |||||||||||| ||||||||| || | ||||||| || |||||||||||||||||||||    
T  42167782 taaatttatattgtatcgatattctctgtcaatttgaa-tgaatgaatatcatttatttt 42167724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 48652162 - 48652112
Alignment:
Q  33 tattatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    |||| ||||||| |||||||||||||| || |||||||||||||||||||||    
T  48652162 tattgtatcgatgtactttatcaatttgaa-tgaatgaatatcatttatttt 48652112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 84
Target Start/End: Complemental strand, 43839243 - 43839186
Alignment:
Q  26 aaatttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    ||||||| ||||||||||| |||| |||||||||  |||||||||||||||| ||||||    
T  43839243 aaatttacattatatcgatgtactctatcaattt-gaatgaatgaatatcatctatttt 43839186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 101
Target Start/End: Complemental strand, 1074612 - 1074540
Alignment:
Q  28 atttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttattttatcaaaagaataaaaaa 101  Q
    |||| |||||||||||| |||| ||||||||| || |||||||||||| |||||||| | |||| || ||||||    
T  1074612 atttgtattatatcgatgtactctatcaatttgaa-tgaatgaatatcgtttattttgtaaaaaaaagaaaaaa 1074540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 94
Target Start/End: Complemental strand, 7869172 - 7869101
Alignment:
Q  27 aatttatattatatcgatatactttatcaatttaa---aatgaatgaatatcattta-ttttatcaaaagaa 94  Q
    |||||||||| |||||||||||| ||||||||| |   ||||||| ||||||||||| |||| |||||||||    
T  7869172 aatttatattttatcgatatactctatcaatttgaatgaatgaatcaatatcatttagttttgtcaaaagaa 7869101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 91
Target Start/End: Original strand, 27831498 - 27831550
Alignment:
Q  38 tatcgatatactttatcaatttaaaatgaatgaatatcatttattttatcaaaa 91  Q
    ||||||| |||| |||||||||||| ||||| ||||||||||||||| ||||||    
T  27831498 tatcgatgtactctatcaatttaaa-tgaataaatatcatttattttgtcaaaa 27831550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 91
Target Start/End: Original strand, 43030079 - 43030135
Alignment:
Q  34 attatatcgatatactttatcaatttaaaatgaatgaatatcatttattttatcaaaa 91  Q
    ||||||||||| |||| ||||||||| || |||||||||||| |||||||| ||||||    
T  43030079 attatatcgatgtactctatcaatttgaa-tgaatgaatatcttttattttgtcaaaa 43030135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 48401502 - 48401558
Alignment:
Q  27 aatttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    |||||||||| ||||||| |||| ||||||||| || |||||||||||| ||||||||    
T  48401502 aatttatattgtatcgatgtactctatcaatttgaa-tgaatgaatatcgtttatttt 48401558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 53155149 - 53155093
Alignment:
Q  27 aatttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    ||||| |||| ||||||| |||| |||||||||||| |||||||||||| ||||||||    
T  53155149 aatttgtattgtatcgatgtactctatcaatttaaa-tgaatgaatatcgtttatttt 53155093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 33637805 - 33637860
Alignment:
Q  28 atttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    |||| |||| ||||||| ||||||||||||||  |||||||||||||| ||||||||    
T  33637805 atttgtattgtatcgatgtactttatcaattt-gaatgaatgaatatcgtttatttt 33637860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 36623981 - 36623926
Alignment:
Q  28 atttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    ||||||||| || |||| |||| ||||||||| || |||||||||||||||||||||    
T  36623981 atttatattgtaccgatgtactctatcaatttgaa-tgaatgaatatcatttatttt 36623926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 49627822 - 49627767
Alignment:
Q  28 atttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    ||||||||| ||||||| |||| ||||||||| || |||||||||||| ||||||||    
T  49627822 atttatattgtatcgatgtactctatcaatttgaa-tgaatgaatatcgtttatttt 49627767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 84
Target Start/End: Original strand, 36868416 - 36868474
Alignment:
Q  25 taaatttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    ||||||||||||||||||||||||| |||||||||  |||||||||||||| ||||||||    
T  36868416 taaatttatattatatcgatatactctatcaattt-gaatgaatgaatatcgtttatttt 36868474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 84
Target Start/End: Original strand, 11931268 - 11931317
Alignment:
Q  34 attatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    ||||||||||| |||||||||||||| || |||||||||||||||||||||    
T  11931268 attatatcgatgtactttatcaatttgaa-tgaatgaatatcatttatttt 11931317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 23256348 - 23256302
Alignment:
Q  35 ttatatcgatatactttatcaatttaaaatgaatgaatatcatttatt 82  Q
    |||||||||||||| |||||||||| || |||||||||||||||||||    
T  23256348 ttatatcgatataccttatcaatttgaa-tgaatgaatatcatttatt 23256302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 84
Target Start/End: Complemental strand, 7581807 - 7581762
Alignment:
Q  38 tatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    ||||||||||||||||||||||  ||||||| |||||||||||||||    
T  7581807 tatcgatatactttatcaattt-gaatgaataaatatcatttatttt 7581762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 28413469 - 28413424
Alignment:
Q  41 cgatatactttatcaatttaaaatgaatgaatatcatttattttatc 87  Q
    |||||||||||||||| ||||| | ||||||||||||||||||||||    
T  28413469 cgatatactttatcaacttaaa-tcaatgaatatcatttattttatc 28413424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 91
Target Start/End: Original strand, 3390819 - 3390875
Alignment:
Q  34 attatatcgatatactttatcaatttaaaatgaatgaatatcatttattttatcaaaa 91  Q
    ||||||||||| |||| ||||||||| || |||||||||||| |||||||| ||||||    
T  3390819 attatatcgatgtactctatcaatttgaa-tgaatgaatatcttttattttttcaaaa 3390875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 91
Target Start/End: Complemental strand, 9207074 - 9207018
Alignment:
Q  34 attatatcgatatactttatcaatttaaaatgaatgaatatcatttattttatcaaaa 91  Q
    ||||||||||| |||| |||||||| ||| ||||||||| ||||||||||| ||||||    
T  9207074 attatatcgatgtactctatcaattcaaa-tgaatgaatgtcatttattttgtcaaaa 9207018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 9689696 - 9689640
Alignment:
Q  27 aatttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    ||||| |||||||||||| |||| ||||||||| ||||||||| ||||| ||||||||    
T  9689696 aatttgtattatatcgatgtactctatcaattt-aaatgaatgtatatcgtttatttt 9689640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 13113421 - 13113477
Alignment:
Q  27 aatttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    |||||||||||||||||| || | ||||||||| |||||||| |||||| ||||||||    
T  13113421 aatttatattatatcgatgtattctatcaattt-aaatgaataaatatcgtttatttt 13113477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 15920263 - 15920319
Alignment:
Q  27 aatttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    ||||| |||| ||||||| |||| ||||||||| || |||||||||||||||||||||    
T  15920263 aatttgtattgtatcgatgtactctatcaatttgaa-tgaatgaatatcatttatttt 15920319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 19904899 - 19904955
Alignment:
Q  27 aatttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    ||||| |||||||||||| |||| ||||||||| |||||||||||||| | |||||||    
T  19904899 aatttgtattatatcgatgtactatatcaattt-aaatgaatgaatattaattatttt 19904955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 25622769 - 25622713
Alignment:
Q  27 aatttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    |||||| ||| ||||||| |||| |||||||||||| ||||||||| |||||||||||    
T  25622769 aatttacattgtatcgatgtactctatcaatttaaa-tgaatgaatgtcatttatttt 25622713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 91
Target Start/End: Original strand, 25771841 - 25771897
Alignment:
Q  34 attatatcgatatactttatcaatttaaaatgaatgaatatcatttattttatcaaaa 91  Q
    ||||||||||| |||| ||||||||| || |||||||||||| |||||||| ||||||    
T  25771841 attatatcgatgtactctatcaatttgaa-tgaatgaatatcttttattttgtcaaaa 25771897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 4878450 - 4878403
Alignment:
Q  36 tatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    ||||||||| |||| ||||||||| || |||||||||||||||||||||    
T  4878450 tatatcgatgtactctatcaatttgaa-tgaatgaatatcatttatttt 4878403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 16136489 - 16136544
Alignment:
Q  28 atttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    |||| |||||||||||| |||| |||||||||  |||||||||||||| ||||||||    
T  16136489 atttgtattatatcgatgtactctatcaattt-gaatgaatgaatatcgtttatttt 16136544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 23732119 - 23732063
Alignment:
Q  27 aatttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    |||||| |||||||| || ||||||||||||||||| |||||||||||||||||||||    
T  23732119 aatttacattatatcaatgtactttatcaatttaaa-tgaatgaatatcatttatttt 23732063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 26017383 - 26017327
Alignment:
Q  27 aatttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    |||||||||||||||||| |||| |||||||||  |||||||||||||||||||||||    
T  26017383 aatttatattatatcgatgtactctatcaattt-gaatgaatgaatatcatttatttt 26017327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 101
Target Start/End: Complemental strand, 134871 - 134797
Alignment:
Q  26 aaatttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttattttatcaaaagaataaaaaa 101  Q
    ||||||| ||||||||||| |||| ||||||||| || |||||||||||| |||||||| | |||| |||||||||    
T  134871 aaatttacattatatcgatgtactctatcaatttgaa-tgaatgaatatcttttattttgttaaaaaaataaaaaa 134797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 101
Target Start/End: Original strand, 10574776 - 10574848
Alignment:
Q  28 atttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttattttatcaaaagaataaaaaa 101  Q
    ||||||||| ||| ||| |||| ||||||||| || ||||||||||||||||||||| |||||| || ||||||    
T  10574776 atttatattgtattgatgtactctatcaatttgaa-tgaatgaatatcatttattttgtcaaaaaaaaaaaaaa 10574848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 37399987 - 37400043
Alignment:
Q  27 aatttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    |||||| |||||||||||||||| |||||||||  ||||||||||||| |||||||||    
T  37399987 aatttacattatatcgatatactctatcaattt-gaatgaatgaatataatttatttt 37400043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 64
Target Start/End: Complemental strand, 40016605 - 40016568
Alignment:
Q  27 aatttatattatatcgatatactttatcaatttaaaat 64  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  40016605 aatttgtattatatcgatatactttatcaatttaaaat 40016568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 43847384 - 43847439
Alignment:
Q  28 atttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    |||| |||| |||||||||||| ||||||||| || |||||||||||||||||||||    
T  43847384 atttgtattgtatcgatatactctatcaatttgaa-tgaatgaatatcatttatttt 43847439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 44482588 - 44482533
Alignment:
Q  28 atttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    ||||||||||||||||| |||| |||||||||  |||||||||||||| ||||||||    
T  44482588 atttatattatatcgatgtactctatcaattt-gaatgaatgaatatcgtttatttt 44482533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 102
Target Start/End: Original strand, 8319713 - 8319779
Alignment:
Q  36 tatatcgatatactttatcaatttaaaatgaatgaatatcattt-attttatcaaaagaataaaaaat 102  Q
    ||||||||| |||| |||||||||||| ||||||||||||||||  |||| |||||| ||||||||||    
T  8319713 tatatcgatgtactctatcaatttaaa-tgaatgaatatcatttgtttttgtcaaaaaaataaaaaat 8319779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 7986280 - 7986337
Alignment:
Q  26 aaatttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    |||||| |||||||||||| |||| |||||||||  |||||||||||||| ||||||||    
T  7986280 aaatttgtattatatcgatctactctatcaattt-gaatgaatgaatatcttttatttt 7986337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 84
Target Start/End: Complemental strand, 30992542 - 30992493
Alignment:
Q  34 attatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    ||||||||||| |||| ||||||||| || |||||||||||||||||||||    
T  30992542 attatatcgatgtactctatcaatttgaa-tgaatgaatatcatttatttt 30992493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 84
Target Start/End: Complemental strand, 43806868 - 43806819
Alignment:
Q  34 attatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    ||||||||||| |||| ||||||||| |||||||||||||| |||||||||    
T  43806868 attatatcgatgtactctatcaattt-aaatgaatgaatataatttatttt 43806819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 47750123 - 47750190
Alignment:
Q  27 aatttatattatatcgatatactttatcaatttaaa---atgaatgaatatcatttattttatcaaaa 91  Q
    |||||| ||||||||||| |||| ||||||||| ||   ||||||||||||| |||||||| ||||||    
T  47750123 aatttacattatatcgatgtactctatcaatttgaatgaatgaatgaatatcttttattttgtcaaaa 47750190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 2623003 - 2623058
Alignment:
Q  28 atttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    ||||||||||||| ||| |||| |||||||||  |||||||||||||| ||||||||    
T  2623003 atttatattatatagatgtactctatcaattt-gaatgaatgaatatcgtttatttt 2623058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 17508914 - 17508863
Alignment:
Q  28 atttatattatatcgatatactttatcaatttaaaatgaatgaatatcattta 80  Q
    |||| |||| ||||||| |||| ||||||||||||| ||||||||||||||||    
T  17508914 atttgtattgtatcgatgtactctatcaatttaaaa-gaatgaatatcattta 17508863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 17544300 - 17544351
Alignment:
Q  28 atttatattatatcgatatactttatcaatttaaaatgaatgaatatcattta 80  Q
    |||| |||| ||||||| |||| ||||||||||||| ||||||||||||||||    
T  17544300 atttgtattgtatcgatgtactctatcaatttaaaa-gaatgaatatcattta 17544351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 24319933 - 24319878
Alignment:
Q  28 atttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    |||| |||| ||||||| |||| |||||||||||| |||||||||||| ||||||||    
T  24319933 atttgtattgtatcgatgtactctatcaatttaaa-tgaatgaatatcgtttatttt 24319878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 46025765 - 46025710
Alignment:
Q  28 atttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    |||| |||| ||||||| ||||||||||||||  |||||||||||||| ||||||||    
T  46025765 atttgtattgtatcgatgtactttatcaattt-gaatgaatgaatatcgtttatttt 46025710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 48304102 - 48304047
Alignment:
Q  28 atttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    |||| |||| ||||||| ||||||||||||||  |||||||||||||| ||||||||    
T  48304102 atttgtattgtatcgatgtactttatcaattt-gaatgaatgaatatcgtttatttt 48304047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 6886896 - 6886829
Alignment:
Q  34 attatatcgatatactttatcaatttaaaatgaatgaatatcatttattttatcaaaagaataaaaaat 102  Q
    ||||||||||| |||| |||||||||||| |||||||||||| |||||||| |||||| || |||||||    
T  6886896 attatatcgatgtactctatcaatttaaa-tgaatgaatatcttttattttgtcaaaaaaaaaaaaaat 6886829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 84
Target Start/End: Complemental strand, 9196744 - 9196686
Alignment:
Q  25 taaatttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    ||||||||||||||||| || |||| |||||||||  |||||||||||||| ||||||||    
T  9196744 taaatttatattatatcaatgtactctatcaattt-gaatgaatgaatatcgtttatttt 9196686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 84
Target Start/End: Original strand, 5378698 - 5378747
Alignment:
Q  34 attatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    ||||||||||| |||| ||||||||| || |||||||||||||||||||||    
T  5378698 attatatcgatgtactctatcaatttgaa-tgaatgaatatcatttatttt 5378747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 84
Target Start/End: Complemental strand, 39308471 - 39308422
Alignment:
Q  34 attatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    ||||||||||| ||||||||||| || || |||||||||||||||||||||    
T  39308471 attatatcgatgtactttatcaaattgaa-tgaatgaatatcatttatttt 39308422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 6281454 - 6281518
Alignment:
Q  27 aatttatattatatcgatatactttatcaatttaaaatgaatgaatatcattta-ttttatcaaaa 91  Q
    ||||| |||| |||||||||||| |||||||||  |||||||||||||| |||| |||||||||||    
T  6281454 aatttgtattgtatcgatatactctatcaattt-gaatgaatgaatatcgtttacttttatcaaaa 6281518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 11734556 - 11734500
Alignment:
Q  27 aatttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    ||||| |||| ||||||| ||||||||||||||  |||||||||||||| ||||||||    
T  11734556 aatttgtattgtatcgatgtactttatcaattt-gaatgaatgaatatcgtttatttt 11734500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 17218112 - 17218168
Alignment:
Q  27 aatttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    ||||| |||| ||||||| |||| ||||||||| || |||||||||||||||||||||    
T  17218112 aatttttattgtatcgatgtactctatcaatttgaa-tgaatgaatatcatttatttt 17218168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 91
Target Start/End: Original strand, 31646225 - 31646281
Alignment:
Q  34 attatatcgatatactttatcaatttaaaatgaatgaatatcatttattttatcaaaa 91  Q
    ||||||||||| |||| ||||||||| || |||||||||||| |||||||| ||||||    
T  31646225 attatatcgatgtactctatcaatttgaa-tgaatgaatatcttttattttgtcaaaa 31646281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 32309906 - 32309962
Alignment:
Q  27 aatttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    |||||||||||||||||| |||| |||||||||  ||||||| |||||| ||||||||    
T  32309906 aatttatattatatcgatgtactctatcaattt-gaatgaatcaatatcgtttatttt 32309962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 41358423 - 41358479
Alignment:
Q  27 aatttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    |||||| ||||||||||| |||| |||||||||  ||||||||||||||||| |||||    
T  41358423 aatttacattatatcgatgtactctatcaattt-gaatgaatgaatatcattcatttt 41358479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 43415613 - 43415669
Alignment:
Q  25 taaatttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttatt 82  Q
    |||||||||||||||| ||||||||||||| ||||  |||  ||||||||||||||||    
T  43415613 taaatttatattatattgatatactttatcgattt-gaatagatgaatatcatttatt 43415669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 39179555 - 39179500
Alignment:
Q  28 atttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    |||| |||| ||||||| ||||||||||||||  |||||||||||||| ||||||||    
T  39179555 atttgtattgtatcgatgtactttatcaattt-gaatgaatgaatatcgtttatttt 39179500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 84
Target Start/End: Complemental strand, 11281 - 11223
Alignment:
Q  25 taaatttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    ||||||| |||| |||||||||||| ||||||||| |||||||| |||||||||||||||    
T  11281 taaatttttattgtatcgatatactctatcaattt-aaatgaattaatatcatttatttt 11223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 84
Target Start/End: Original strand, 17347983 - 17348041
Alignment:
Q  25 taaatttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    |||||||||||||||||||| |||| ||||||||| |||||| |||||||| ||||||||    
T  17347983 taaatttatattatatcgatgtactctatcaattt-aaatgagtgaatatcgtttatttt 17348041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 84
Target Start/End: Original strand, 43504205 - 43504263
Alignment:
Q  25 taaatttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    |||||||||||||||| |||||||| ||||||| | |||| |||||||||||||||||||    
T  43504205 taaatttatattatattgatatactctatcaatgt-aaataaatgaatatcatttatttt 43504263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 88
Target Start/End: Original strand, 23257484 - 23257537
Alignment:
Q  34 attatatcgatatactttatcaatttaaaatgaatgaatatcatttattttatca 88  Q
    ||||||||||| |||| |||||||||||| ||||| |||||||||||||||||||    
T  23257484 attatatcgatgtactctatcaatttaaa-tgaataaatatcatttattttatca 23257537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 98
Target Start/End: Complemental strand, 15276164 - 15276101
Alignment:
Q  34 attatatcgatatactttatcaatttaaaatgaatgaatatcatttattttatcaaaagaataaa 98  Q
    ||||||||||| |||| ||||||||| || |||||||||||| |||||||| |||||| ||||||    
T  15276164 attatatcgatgtactctatcaatttgaa-tgaatgaatatcttttattttgtcaaaaaaataaa 15276101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 27 - 102
Target Start/End: Original strand, 13999352 - 13999425
Alignment:
Q  27 aatttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttattttatcaaaagaataaaaaat 102  Q
    ||||| |||| ||||||||||||||| |||||| |||| |||||||||| |||||||||| |||| || |||||||    
T  13999352 aatttgtattctatcgatatactttaccaattt-aaataaatgaatatc-tttattttataaaaaaaaaaaaaaat 13999425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 27 - 101
Target Start/End: Original strand, 51418394 - 51418468
Alignment:
Q  27 aatttatattatatcgatatactttatcaatttaaaatgaatgaatatcattta-ttttatcaaaagaataaaaaa 101  Q
    ||||| |||||||||||| |||| ||||||||| ||||||||||||||| |||| |||| |||||| || ||||||    
T  51418394 aatttgtattatatcgatgtactctatcaattt-aaatgaatgaatatcgtttacttttgtcaaaaaaaaaaaaaa 51418468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 89
Target Start/End: Complemental strand, 6212639 - 6212578
Alignment:
Q  27 aatttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttattttatcaa 89  Q
    |||||| |||||||||||||||| |||||||||  ||||||| |||||| |||||||| ||||    
T  6212639 aatttacattatatcgatatactctatcaattt-gaatgaataaatatcttttattttgtcaa 6212578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 84
Target Start/End: Original strand, 49652231 - 49652280
Alignment:
Q  34 attatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    ||||||||||| |||| ||||||||| || |||||||||||||||||||||    
T  49652231 attatatcgatgtactctatcaatttgaa-tgaatgaatatcatttatttt 49652280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 100
Target Start/End: Original strand, 900440 - 900512
Alignment:
Q  27 aatttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttattttatcaaaagaataaaaa 100  Q
    |||||| ||| ||||||| |||| ||||||||| || ||||||||||| |||||||||   |||||||||||||    
T  900440 aatttacattgtatcgatgtactctatcaatttgaa-tgaatgaatataatttatttttgtaaaagaataaaaa 900512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 26771495 - 26771551
Alignment:
Q  27 aatttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    ||||| |||| ||||||| |||| ||||||||| || |||||||||||||||||||||    
T  26771495 aatttgtattgtatcgatgtactctatcaatttgaa-tgaatgaatatcatttatttt 26771551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 91
Target Start/End: Complemental strand, 38644515 - 38644459
Alignment:
Q  34 attatatcgatatactttatcaatttaaaatgaatgaatatcatttattttatcaaaa 91  Q
    ||||||| ||| |||| |||||||||||| ||||||||||| ||||||||| ||||||    
T  38644515 attatattgatgtactctatcaatttaaa-tgaatgaatataatttattttgtcaaaa 38644459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 424003 - 423956
Alignment:
Q  27 aatttatattatatcgatatactttatcaatttaaaatgaatgaatatc 75  Q
    ||||| |||||||||||||||||||||| ||||  ||||||||||||||    
T  424003 aatttgtattatatcgatatactttatcgattt-gaatgaatgaatatc 423956  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 12967449 - 12967402
Alignment:
Q  36 tatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    ||||||||| |||| ||||||||| || |||||||||||||||||||||    
T  12967449 tatatcgatgtactctatcaatttgaa-tgaatgaatatcatttatttt 12967402  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 102
Target Start/End: Complemental strand, 25032814 - 25032739
Alignment:
Q  27 aatttatattatatcgatatactttatcaatttaaaatgaatgaatatcattta-ttttatcaaaagaataaaaaat 102  Q
    ||||| |||| ||||||| |||| ||||||||| || |||||||||||| |||| |||||| |||| ||||||||||    
T  25032814 aatttgtattgtatcgatgtactctatcaatttgaa-tgaatgaatatcgtttatttttataaaaaaaataaaaaat 25032739  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 6408833 - 6408890
Alignment:
Q  26 aaatttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    |||||| ||||||||| || |||||| |||||||||| |||||||||||||||||||||    
T  6408833 aaatttttattatatcaatgtactttgtcaatttaaa-tgaatgaatatcatttatttt 6408890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 7579501 - 7579448
Alignment:
Q  33 tattatatcgatatactttatcaatttaa--aatgaatgaatatcatttatttt 84  Q
    |||||||||||| ||||||||||||| ||  |||||||||||||||||||||||    
T  7579501 tattatatcgatgtactttatcaattgaatgaatgaatgaatatcatttatttt 7579448  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 84
Target Start/End: Original strand, 34668582 - 34668631
Alignment:
Q  34 attatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    ||||||||||| |||||||||||||| |||||||| |||||||||||||||    
T  34668582 attatatcgatgtactttatcaattt-aaatgaataaatatcatttatttt 34668631  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 46716619 - 46716563
Alignment:
Q  27 aatttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    |||||| ||||||||||| |||| ||||||||| || |||||||||||||||||||||    
T  46716619 aatttacattatatcgatgtactatatcaatttgaa-tgaatgaatatcatttatttt 46716563  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 56250559 - 56250616
Alignment:
Q  27 aatttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    ||||| |||||||||||| |||||||||||||| |||| |||||||||  ||||||||    
T  56250559 aatttgtattatatcgatgtactttatcaattttaaataaatgaatattgtttatttt 56250616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 20887467 - 20887412
Alignment:
Q  28 atttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    ||||||||| ||||||| |||| ||||||||| ||||||||||||||| ||||||||    
T  20887467 atttatattgtatcgatgtactctatcaattt-aaatgaatgaatatcgtttatttt 20887412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 34 - 101
Target Start/End: Original strand, 4634679 - 4634745
Alignment:
Q  34 attatatcgatatactttatcaatttaaaatgaatgaatatcatttattttatcaaaagaataaaaaa 101  Q
    ||||||||||| |||| ||||||||| || |||||||||||| |||||||| |||||| || ||||||    
T  4634679 attatatcgatgtactctatcaatttgaa-tgaatgaatatcttttattttgtcaaaaaaaaaaaaaa 4634745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 34 - 101
Target Start/End: Original strand, 9662249 - 9662315
Alignment:
Q  34 attatatcgatatactttatcaatttaaaatgaatgaatatcatttattttatcaaaagaataaaaaa 101  Q
    ||||||||||| |||| ||||||||| || |||||||||||| |||||||| |||||| || ||||||    
T  9662249 attatatcgatgtactctatcaatttgaa-tgaatgaatatcttttattttgtcaaaaaaaaaaaaaa 9662315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 101
Target Start/End: Complemental strand, 14542237 - 14542164
Alignment:
Q  27 aatttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttattttatcaaaagaataaaaaa 101  Q
    |||||| ||||||||||| || | ||||||||| || |||||||||||| |||||||| |||||| || ||||||    
T  14542237 aatttacattatatcgatgtattctatcaatttgaa-tgaatgaatatcttttattttgtcaaaaaaaaaaaaaa 14542164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 84
Target Start/End: Complemental strand, 29576831 - 29576790
Alignment:
Q  42 gatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    |||||||||||||||||| || |||||||||||||||||||||    
T  29576831 gatatactttatcaatttgaa-tgaatgaatatcatttatttt 29576790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 84
Target Start/End: Complemental strand, 30416341 - 30416296
Alignment:
Q  38 tatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    ||||||| |||| |||||||||||| |||||||||||||||||||||    
T  30416341 tatcgatgtactctatcaatttaaa-tgaatgaatatcatttatttt 30416296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 84
Target Start/End: Complemental strand, 44374993 - 44374944
Alignment:
Q  34 attatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    ||||||||||| |||| ||||||||| || |||||||||||||||||||||    
T  44374993 attatatcgatgtactctatcaatttgaa-tgaatgaatatcatttatttt 44374944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 37431566 - 37431622
Alignment:
Q  27 aatttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    ||||| |||| |||||||||||| ||||||||||||| ||| ||||||| ||||||||    
T  37431566 aatttgtattgtatcgatatactctatcaatttaaaa-gaaagaatatcgtttatttt 37431622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 91
Target Start/End: Original strand, 41486970 - 41487026
Alignment:
Q  34 attatatcgatatactttatcaatttaaaatgaatgaatatcatttattttatcaaaa 91  Q
    ||||| ||||| |||| ||||||||| || |||||||||||| |||||||||||||||    
T  41486970 attatttcgatgtactctatcaatttgaa-tgaatgaatatcttttattttatcaaaa 41487026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 393984 - 393929
Alignment:
Q  28 atttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    |||| |||| ||||||| ||||||||||||||  |||||||||||||| ||||||||    
T  393984 atttgtattgtatcgatgtactttatcaattt-gaatgaatgaatatcgtttatttt 393929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 18502552 - 18502497
Alignment:
Q  28 atttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    |||| |||| ||||||| |||| |||||||||||| |||||||||||| ||||||||    
T  18502552 atttgtattgtatcgatgtactctatcaatttaaa-tgaatgaatatcgtttatttt 18502497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 19745801 - 19745856
Alignment:
Q  28 atttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    |||| |||| |||||||||||| ||||||||| |||||| |||||||| ||||||||    
T  19745801 atttgtattgtatcgatatactctatcaattt-aaatgattgaatatcgtttatttt 19745856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 19794005 - 19793950
Alignment:
Q  28 atttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    |||| |||| |||||||||||| ||||||||| |||||| |||||||| ||||||||    
T  19794005 atttgtattgtatcgatatactctatcaattt-aaatgattgaatatcgtttatttt 19793950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 24100544 - 24100599
Alignment:
Q  28 atttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    |||| |||| ||||||| |||| ||||||||| || |||||||||||||||||||||    
T  24100544 atttgtattgtatcgatgtactctatcaatttgaa-tgaatgaatatcatttatttt 24100599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 94
Target Start/End: Original strand, 53903975 - 53904034
Alignment:
Q  34 attatatcgatatactttatcaatttaaaatgaatgaatatcatttattttatcaaaagaa 94  Q
    ||||||||||| |||| | ||||||| || |||||||||||| |||||||| |||||||||    
T  53903975 attatatcgatgtactctttcaatttgaa-tgaatgaatatcttttattttgtcaaaagaa 53904034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 84
Target Start/End: Original strand, 3303 - 3361
Alignment:
Q  25 taaatttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    |||||||||||| ||||||| |||| |||||||||  |||||||||||||| ||||||||    
T  3303 taaatttatattgtatcgatgtactctatcaattt-gaatgaatgaatatcgtttatttt 3361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0722 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0722
Description:

Target: scaffold0722; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 84
Target Start/End: Complemental strand, 5252 - 5195
Alignment:
Q  26 aaatttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    |||||| |||||||||||| |||| ||| ||||| || |||||||||||||||||||||    
T  5252 aaatttgtattatatcgatgtactctataaatttgaa-tgaatgaatatcatttatttt 5195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 6841 - 6787
Alignment:
Q  27 aatttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttat 81  Q
    ||||| |||| ||||||| |||| ||||||||| ||||||||||||||| |||||    
T  6841 aatttgtattgtatcgatgtactctatcaatttgaaatgaatgaatatcgtttat 6787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 2159 - 2103
Alignment:
Q  27 aatttatattatatcgatatactttatcaatttaaaatgaatgaatatcatttatttt 84  Q
    ||||| |||| ||||||| ||||||||||||||  |||||||||||||| ||||||||    
T  2159 aatttgtattgtatcgatgtactttatcaattt-gaatgaatgaatatcgtttatttt 2103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 6546 - 6593
Alignment:
Q  27 aatttatattatatcgatatactttatcaatttaaaatgaatgaatatc 75  Q
    ||||| |||||||||||||||||||||| ||||  ||||||||||||||    
T  6546 aatttgtattatatcgatatactttatcgattt-gaatgaatgaatatc 6593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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