View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1884_low_5 (Length: 278)
Name: NF1884_low_5
Description: NF1884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1884_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 8 - 262
Target Start/End: Complemental strand, 28240314 - 28240060
Alignment:
| Q |
8 |
atgaagcattgacactgtcacgtaaacaccaattataaattgtgaaaatagcagtaattagatgtaattacatgtcagtgtcaggcattggacacgcctt |
107 |
Q |
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| T |
28240314 |
atgaagcattgacactggcacgtaaacaccaattataaattgtgaaaatagcagtaattagatgtaattacttgtgagtgtcaggcattggacacgcctt |
28240215 |
T |
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| Q |
108 |
caacttgaagtgtcggtgctacataggtcaagtgtaatttttgttcctcgccagatttcaatgcatgaacacctaattaaggttcgtaatattgtggaga |
207 |
Q |
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| T |
28240214 |
caacttgaagtgtcggtgctacatagatcaagtataatttttgttcctcgccagatttcaatgcatgaacacccaattaaggttcgtaatattgtggaga |
28240115 |
T |
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| Q |
208 |
gcattatatggctaaaactattatcctaaagtaattgagaaaataccgaacatct |
262 |
Q |
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| T |
28240114 |
gcattatattgctaaaactattatcctaaagtaattgagaaaatactgaacatct |
28240060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 173
Target Start/End: Original strand, 21158113 - 21158182
Alignment:
| Q |
105 |
cttcaacttgaagtgtcggtgctacataggtcaagtgt-aatttttgttcctcgccagatttcaatgcat |
173 |
Q |
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| T |
21158113 |
cttcaatttgaagtgttggtgttacataggtcaaatgtaaatttgtgttcctcaccagatttcaatgcat |
21158182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 176
Target Start/End: Complemental strand, 28232602 - 28232548
Alignment:
| Q |
122 |
ggtgctacataggtcaagtgtaatttttgttcctcgccagatttcaatgcatgaa |
176 |
Q |
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| T |
28232602 |
ggtgctacgtaggtcaaatataatttttgttccttgccagattttaatgcatgaa |
28232548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 262
Target Start/End: Complemental strand, 4745379 - 4745327
Alignment:
| Q |
210 |
attatatggctaaaactattatcctaaagtaattgagaaaataccgaacatct |
262 |
Q |
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| T |
4745379 |
attatatggctgaaactattatccttaagaaatagagaaaattctgaacatct |
4745327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 93 - 173
Target Start/End: Complemental strand, 1638033 - 1637954
Alignment:
| Q |
93 |
cattggacacgccttcaacttgaagtgtcggtgctacataggtcaagtgtaatttttgttcctcgccagatttcaatgcat |
173 |
Q |
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| T |
1638033 |
cattggatacgtcttcaatttaaagtgtcggtgttttataggtcaaatgtaatttgtgttcctc-ccagatttcaatgcat |
1637954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 132
Target Start/End: Complemental strand, 43163975 - 43163938
Alignment:
| Q |
95 |
ttggacacgccttcaacttgaagtgtcggtgctacata |
132 |
Q |
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| T |
43163975 |
ttggacacaacttcaacttgaagtgtcggtgctacata |
43163938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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