View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18850_high_1 (Length: 1189)

Name: NF18850_high_1
Description: NF18850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18850_high_1
NF18850_high_1
[»] chr4 (18 HSPs)
chr4 (316-1189)||(38412159-38413034)
chr4 (10-309)||(38411744-38412043)
chr4 (123-305)||(55606235-55606416)
chr4 (628-1038)||(38422420-38422804)
chr4 (127-305)||(28146982-28147159)
chr4 (124-305)||(25967999-25968179)
chr4 (132-305)||(13198078-13198250)
chr4 (1126-1189)||(38422858-38422921)
chr4 (223-305)||(11440588-11440670)
chr4 (74-200)||(11440668-11440797)
chr4 (412-484)||(38407541-38407613)
chr4 (314-384)||(25967801-25967872)
chr4 (993-1055)||(38407731-38407791)
chr4 (522-614)||(38422270-38422357)
chr4 (503-561)||(38407632-38407688)
chr4 (314-384)||(28146787-28146858)
chr4 (123-166)||(29866160-29866203)
chr4 (170-270)||(46308387-46308487)
[»] chr7 (11 HSPs)
chr7 (124-310)||(25635893-25636079)
chr7 (119-304)||(39653441-39653626)
chr7 (120-305)||(47363689-47363874)
chr7 (197-305)||(10493472-10493579)
chr7 (141-200)||(10493376-10493435)
chr7 (119-305)||(33049115-33049311)
chr7 (124-209)||(7493053-7493138)
chr7 (314-381)||(47363963-47364030)
chr7 (212-277)||(45435419-45435484)
chr7 (141-234)||(31742958-31743052)
chr7 (125-223)||(45435503-45435603)
[»] chr2 (9 HSPs)
chr2 (123-305)||(37794640-37794821)
chr2 (124-305)||(17988977-17989157)
chr2 (45-242)||(5430210-5430407)
chr2 (125-215)||(19263821-19263911)
chr2 (127-199)||(35016316-35016388)
chr2 (210-295)||(35016457-35016541)
chr2 (246-304)||(5428641-5428699)
chr2 (252-304)||(19263772-19263824)
chr2 (123-165)||(20929880-20929922)
[»] chr3 (4 HSPs)
chr3 (124-305)||(11783396-11783577)
chr3 (144-305)||(7299106-7299267)
chr3 (316-385)||(7298925-7298994)
chr3 (141-178)||(53527191-53527228)
[»] chr1 (12 HSPs)
chr1 (124-278)||(12990541-12990694)
chr1 (118-304)||(34664779-34664964)
chr1 (124-310)||(32617560-32617744)
chr1 (124-305)||(9457617-9457794)
chr1 (124-305)||(9461714-9461891)
chr1 (130-305)||(14081707-14081872)
chr1 (314-385)||(32617859-32617931)
chr1 (314-384)||(9457446-9457517)
chr1 (314-384)||(9461543-9461614)
chr1 (314-383)||(12990144-12990214)
chr1 (226-305)||(24699887-24699966)
chr1 (122-159)||(963102-963139)
[»] chr8 (8 HSPs)
chr8 (127-305)||(23489962-23490139)
chr8 (124-213)||(13402173-13402262)
chr8 (119-200)||(13396888-13396969)
chr8 (127-305)||(7154249-7154439)
chr8 (131-182)||(14370805-14370856)
chr8 (247-305)||(14867365-14867423)
chr8 (327-384)||(14867560-14867618)
chr8 (317-382)||(23490243-23490309)
[»] chr5 (11 HSPs)
chr5 (130-303)||(41283493-41283664)
chr5 (131-305)||(39426087-39426260)
chr5 (131-305)||(22927061-22927236)
chr5 (124-305)||(36491494-36491666)
chr5 (131-305)||(13424636-13424806)
chr5 (318-384)||(13424887-13424954)
chr5 (314-384)||(19967312-19967383)
chr5 (246-305)||(16341523-16341584)
chr5 (41-163)||(19967627-19967749)
chr5 (123-166)||(37247652-37247695)
chr5 (314-384)||(41283294-41283365)
[»] chr6 (7 HSPs)
chr6 (136-305)||(9177588-9177760)
chr6 (125-244)||(26660607-26660726)
chr6 (125-244)||(26766578-26766697)
chr6 (223-305)||(32296363-32296445)
chr6 (212-288)||(10117185-10117259)
chr6 (314-384)||(8169240-8169310)
chr6 (119-166)||(9771928-9771975)
[»] scaffold0989 (1 HSPs)
scaffold0989 (336-382)||(2119-2165)


Alignment Details
Target: chr4 (Bit Score: 732; Significance: 0; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 732; E-Value: 0
Query Start/End: Original strand, 316 - 1189
Target Start/End: Original strand, 38412159 - 38413034
Alignment:
Q  316 cggtaacgtcggctacctatactttttgtcgccgcctttttctcggtaatggaccattttttaaaacctctaagactagtatcaacgatatagtagagca 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38412159 cggtaacgtcggctacctatactttttgtcgccgcctttttctcggtaatggaccattttttaaaacctctaagactagtatcaacgatatagtagagca 38412258  T
Q  416 aactaaatgtgattcacaaatcagcattaatctttcggtggatatcgccattaaaaaatatctttcaataannnnnnnnnnnnnnnnaatcttgaagaat 515  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||                |||||||||| ||    
T  38412259 aactaaatgtgattcacaaatcagcattaatctttcggtggatatcgccattaaaaaagatctttcaataattttatttttttt---aatcttgaagcat 38412355  T
Q  516 taatcatttcaaacaaaaatgtttgcaatgaacactcacttgggacaatgttgtattgagtaagatctactaatgtcaatggttggtatgattgtggata 615  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||    
T  38412356 taatc-tttcaaacaaaaatgtttgcaatgaacactcacttgg-acaatgttgtcttgagtaagatctactaatgtcaatggttggaatgattgtagata 38412453  T
Q  616 ttggttggttaatatgataattgtcatgtgttttatatcacataatggatattttgttgcttcacataacaaatgttaaactctttcaatggaaaatatc 715  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38412454 ttggttggttaatatgataattgtcatgtgttttatatcacataatggatattttgttgcttcacataacaaatgttaaactctttcaatggaaaatatc 38412553  T
Q  716 attttcaagtttgttatatatcaagaattgtcctcgttgttacagtctagtagttttgtatgaagacattttatatcgtgtttccaccatatggccatta 815  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38412554 attttcaagtttgtcatatatcaagaattgtcctcgttgttacagtctagtagttttgtatgaagacattttatatcgtgtttccaccatatggccatta 38412653  T
Q  816 ggtagggcacttatctaataaaataaaattactttgaattatgttgggagtgagagaaggta-----ataattcatccaaaactcatcctc-ttgattca 909  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||| ||||||||    
T  38412654 ggtagggcacttatctaataaaataaaattactttgaattatgttgggagtgagagaaggtaataatataattcatccaaaactcatcctctttgattca 38412753  T
Q  910 aaaaatttgatgatcaactaattttctttagttttgcacccttaaatatatgtgattaatccaaacttaggataagaaactagaaatactaaagcagttt 1009  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  38412754 aaaaatttgatgatcaactaattttctttagttttgcacccttaaatatatgtgattaatacaaacttaggataagaaactagaaatactaaagcagttt 38412853  T
Q  1010 tgaatgaacatataattgaaattacaaaagctaaaaagcattgattgcattgagtaggaagttagaaaaatagtacattacccttacattat-tatatat 1108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||        
T  38412854 tgaatgaacatataattgaaattacaaaagctaaaaagcattgattgcattgagtaggaagttagaaaaatagtacattacccttacattatatatgaga 38412953  T
Q  1109 gagagagagaaaggtgaaaatcagaagctgcaaccacaacaaaggtaaaagaagcagagggtgagaacaagaacaacagcc 1189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38412954 gagagagagaaaggtgaaaatcagaagctgcaaccacaacaaaggtaaaagaagcagagggtgagaacaagaacaacagcc 38413034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 10 - 309
Target Start/End: Original strand, 38411744 - 38412043
Alignment:
Q  10 acatcatcacaaaaacatttttagcagccgaaaggttttaaacaacggtcgcggtcaaggtccaggtcgtgtatatgatttcaccatttcggccgttaca 109  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||    
T  38411744 acatcatcacaaaaatatttttagcagccgaaaggttttaaacaacggtcgcgttcaaggtccaggtcatgtatatgatttcaccatttcggctgttaca 38411843  T
Q  110 tatattgtattatagattgcggttgtcgcgctgtgaattaatcacaacattgcacaacttttaaataatgataggaatgtaaataacttaacctagagat 209  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  38411844 gatattgtattatagattgcggttgtcgcgctgtgaattaatcacaacattgcacaacttttaaacaatgataggaatgtaaataacttaacctagagat 38411943  T
Q  210 agatttgaagttctaaactagataaggaaataacagtatgtaatttataatcaagtatgtagtaaaaatatgattttcatctatcttaattgaaaagata 309  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38411944 agatttggagttctaaactagataaggaaataacattatgtaatttataatcaagtatgtagtaaaaatatgattttcatctatcttaattgaaaagata 38412043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 123 - 305
Target Start/End: Original strand, 55606235 - 55606416
Alignment:
Q  123 agattgcggttgtcgcgctgtgaattaatcacaacattgcacaacttttaaataatgataggaatgtaaataacttaacctagagatagatttgaagttc 222  Q
    ||||| ||||||||||  |||||||||||||||||||||||||||| |||||||||||||| ||  |||||||||||| ||||||| ||||||| |||||    
T  55606235 agattacggttgtcgcattgtgaattaatcacaacattgcacaactcttaaataatgatagtaacttaaataacttaaactagagaaagatttggagttc 55606334  T
Q  223 taaactagataaggaaataacagtatgtaatttataatcaagtatgtagtaaaaatatgattttcatctatcttaattgaaaa 305  Q
    ||||||| |||||||||||||  |||||||||||| ||||| |||||| ||||||||| |||||||||||| | |||||||||    
T  55606335 taaactatataaggaaataac-ttatgtaatttatgatcaaatatgtactaaaaatataattttcatctatatcaattgaaaa 55606416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 100; E-Value: 7e-49
Query Start/End: Original strand, 628 - 1038
Target Start/End: Original strand, 38422420 - 38422804
Alignment:
Q  628 tatgataattgtcatgtgttttatatcacataatggatattttgttgcttcacataacaaatgtt-aaactctttcaatggaaaatatcattttcaagtt 726  Q
    |||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||| |||||||||||| | ||| |||||||||||||||    
T  38422420 tatgataattgtcatgtgttttatttgacataatggatattttgttgcttcacatgacaaatgttaaaactctttcaaggtaaagtatcattttcaagtt 38422519  T
Q  727 tgt--tatatatcaagaattgtcctcgttgttacagtctagtagttttgtatgaagacattttatatcgtgtttccaccatatggccattaggtagggca 824  Q
    |||  |||||||||||||||||||| ||||                     ||||||| |||||||||||| ||||||| | |||||||    |||| ||    
T  38422520 tgttatatatatcaagaattgtccttgttg---------------------tgaagacgttttatatcgtgcttccaccgtgtggccat----taggcca 38422594  T
Q  825 cttatctaataaaataaaattactttgaattatgttgggagtgagagaaggtaataattcatccaaaactcatcctc-ttgattcaaaaaatttgatgat 923  Q
    ||||||||||||  | ||||||||||||||||||||||   |  |  |||| |||||||||||||||||  |||||| ||||||||| |  ||| |||||    
T  38422595 cttatctaataatgt-aaattactttgaattatgttgg--ctagggcaagggaataattcatccaaaacctatcctctttgattcaagacttttcatgat 38422691  T
Q  924 caactaattttctttagttttgcacccttaaatatatgtgattaatccaaacttaggataagaaactag----aaatactaaagcagttttgaatgaa-- 1017  Q
    |||| ||||||||||||||||||||||||||||||         || ||||||||||||||||||||||    |||||||||| | ||||||||||||      
T  38422692 caaccaattttctttagttttgcacccttaaatat---------atacaaacttaggataagaaactagaaataaatactaaatcggttttgaatgaaat 38422782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 91; E-Value: 2e-43
Query Start/End: Original strand, 127 - 305
Target Start/End: Complemental strand, 28147159 - 28146982
Alignment:
Q  127 tgcggttgtcgcgctgtgaattaatcacaacattgcacaacttttaaataatgataggaatgtaaataacttaacctagagatagatttgaagttctaaa 226  Q
    ||||||||||||| |||||||||||||||||||||||||||| |||||||||  ||  ||  |||||||||||| |||| || ||||||| | |||||||    
T  28147159 tgcggttgtcgcggtgtgaattaatcacaacattgcacaactcttaaataatattatcaacttaaataacttaaactagggaaagatttggaattctaaa 28147060  T
Q  227 ctagataaggaaataacagtatgtaatttataatcaagtatgtagtaaaaatatgattttcatctatcttaattgaaaa 305  Q
     |||||||||| |||||  |||||||||||| ||||| |||||| |||||||||||||||||||||||| |||||||||    
T  28147059 ttagataaggagataact-tatgtaatttatgatcaaatatgtactaaaaatatgattttcatctatctcaattgaaaa 28146982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 90; E-Value: 7e-43
Query Start/End: Original strand, 124 - 305
Target Start/End: Complemental strand, 25968179 - 25967999
Alignment:
Q  124 gattgcggttgtcgcgctgtgaattaatcacaacattgcacaacttttaaataatgataggaatgtaaataacttaacctagagatagatttgaagttct 223  Q
    |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||  |  || ||||||||| ||||||| |||| ||| |||||    
T  25968179 gattgcggttgtcgcggtgtgaattaatcacaacattgcacaactcttaaataatgatagtcacttacataacttaaactagagaaagatctgacgttct 25968080  T
Q  224 aaactagataaggaaataacagtatgtaatttataatcaagtatgtagtaaaaatatgattttcatctatcttaattgaaaa 305  Q
    |||||||||||| | |||||  |||||||||||| ||||| ||||||  |||||||||||| |||||||| | |||||||||    
T  25968079 aaactagataagaagataac-ttatgtaatttattatcaaatatgtaccaaaaatatgattatcatctatatcaattgaaaa 25967999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 132 - 305
Target Start/End: Original strand, 13198078 - 13198250
Alignment:
Q  132 ttgtcgcgctgtgaattaatcacaacattgcacaacttttaaataatgataggaatgtaaataacttaacctagagatagatttgaagttctaaactaga 231  Q
    |||||||| |||||||||||||||||||||||||||| ||||| |||||| | ||  |  ||||||||| ||||| | ||||||| ||||||||| ||||    
T  13198078 ttgtcgcggtgtgaattaatcacaacattgcacaactcttaaacaatgatcgtaactttgataacttaaactagacaaagatttggagttctaaattaga 13198177  T
Q  232 taaggaaataacagtatgtaatttataatcaagtatgtagtaaaaatatgattttcatctatcttaattgaaaa 305  Q
    |||||| |||||  |||||||||||| ||||| |||| | ||| |||||||||||||| ||||| |||||||||    
T  13198178 taaggagataac-ttatgtaatttatgatcaaatatgcactaagaatatgattttcatgtatctcaattgaaaa 13198250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 1126 - 1189
Target Start/End: Original strand, 38422858 - 38422921
Alignment:
Q  1126 aaatcagaagctgcaaccacaacaaaggtaaaagaagcagagggtgagaacaagaacaacagcc 1189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38422858 aaatcagaagctgcaaccacaacaaaggtaaaagaagcagagggtgagaacaagaacaacagcc 38422921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 223 - 305
Target Start/End: Complemental strand, 11440670 - 11440588
Alignment:
Q  223 taaactagataaggaaataacagtatgtaatttataatcaagtatgtagtaaaaatatgattttcatctatcttaattgaaaa 305  Q
    ||||||| ||||| | |||||| |||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||    
T  11440670 taaactatataagaagataacattatgtaatttatgatcaaatatgtactaaaaatatgattttcatctatcttaattgaaaa 11440588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 74 - 200
Target Start/End: Complemental strand, 11440797 - 11440668
Alignment:
Q  74 ggtcgtgtatatgatttcaccatttcggccgttacatatattgtattatagattgcggttgtcgcgctgtgaattaatcacaacattgcacaactttta- 172  Q
    ||||||| |||||||||||| |||||||| |||||  || |||  |||| |||||  ||||||||| |||||||||||||||||||||  ||||| |||     
T  11440797 ggtcgtggatatgatttcacgatttcggctgttacgaatgttgcgttatggattgttgttgtcgcggtgtgaattaatcacaacattgttcaactcttaa 11440698  T
Q  173 --aataatgataggaatgtaaataacttaa 200  Q
      ||||||||||| ||||||||||||||||    
T  11440697 ataataatgatagtaatgtaaataacttaa 11440668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 412 - 484
Target Start/End: Original strand, 38407541 - 38407613
Alignment:
Q  412 agcaaactaaatgtgattcacaaatcagcattaatctttcggtggatatcgccattaaaaaatatctttcaat 484  Q
    |||||||  |||||||||||||||| |||||||||||||| |||||||| |||||||||||| ||||||||||    
T  38407541 agcaaacccaatgtgattcacaaattagcattaatctttctgtggatattgccattaaaaaaaatctttcaat 38407613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 314 - 384
Target Start/End: Complemental strand, 25967872 - 25967801
Alignment:
Q  314 aacggtaacgtcggctacctatac-tttttgtcgccgcctttttctcggtaatggaccattttttaaaacct 384  Q
    |||||||||||| ||||||||||| |||||||||| ||||| |||||||||| ||||||| |||||||||||    
T  25967872 aacggtaacgtccgctacctatacctttttgtcgcagccttattctcggtaacggaccatattttaaaacct 25967801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 993 - 1055
Target Start/End: Original strand, 38407731 - 38407791
Alignment:
Q  993 aaatactaaagcagttttgaatgaacatataattgaaattacaaaagctaaaaagcattgatt 1055  Q
    |||||||||||  ||||||||||||||||  ||||||||||||||||||||||||| ||||||    
T  38407731 aaatactaaagtggttttgaatgaacata--attgaaattacaaaagctaaaaagctttgatt 38407791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 522 - 614
Target Start/End: Original strand, 38422270 - 38422357
Alignment:
Q  522 tttcaaacaaaaatgtttgcaatgaacactcacttgggacaatgttgtattgagtaagatctactaatgtcaatggttggtatgattgtggat 614  Q
    ||||||||| |||||||| ||| ||||  ||||||| ||||||||||| || |||||||||| |||||   ||||||||||||||||||||||    
T  38422270 tttcaaacagaaatgtttacaaggaac--tcacttgagacaatgttgtcttcagtaagatctgctaat---aatggttggtatgattgtggat 38422357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 503 - 561
Target Start/End: Original strand, 38407632 - 38407688
Alignment:
Q  503 aatcttgaagaattaatcatttcaaacaaaaatgtttgcaatgaacactcacttgggac 561  Q
    |||||||||| ||||||| |||||||||||||||||| ||||||  |||||||||||||    
T  38407632 aatcttgaagcattaatcttttcaaacaaaaatgtttacaatga--actcacttgggac 38407688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 314 - 384
Target Start/End: Complemental strand, 28146858 - 28146787
Alignment:
Q  314 aacggtaacgtcggctacctatac-tttttgtcgccgcctttttctcggtaatggaccattttttaaaacct 384  Q
    |||||||| ||| ||||||||||| ||||||| || ||||||||||| ||||  |||| |||||||||||||    
T  28146858 aacggtaatgtccgctacctatacctttttgttgcggcctttttctccgtaacagaccgttttttaaaacct 28146787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 166
Target Start/End: Complemental strand, 29866203 - 29866160
Alignment:
Q  123 agattgcggttgtcgcgctgtgaattaatcacaacattgcacaa 166  Q
    |||||| |||||||| | ||||||||||||||||||||||||||    
T  29866203 agattgtggttgtcgtggtgtgaattaatcacaacattgcacaa 29866160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 270
Target Start/End: Original strand, 46308387 - 46308487
Alignment:
Q  170 ttaaataatgataggaatgtaaataacttaacct-agagatagatttgaagttctaaactagataaggaaataacagtatgtaatttataatcaagtatg 268  Q
    |||||||||||||| ||  ||||||||||||  | ||||| ||||||  ||||||||||||  |||||| |||||  |||||||||||| ||||| ||||    
T  46308387 ttaaataatgatagtaacttaaataacttaaattgagagagagatttagagttctaaactaactaaggagataac-ttatgtaatttatgatcaaatatg 46308485  T
Q  269 ta 270  Q
    ||    
T  46308486 ta 46308487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 107; Significance: 5e-53; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 5e-53
Query Start/End: Original strand, 124 - 310
Target Start/End: Original strand, 25635893 - 25636079
Alignment:
Q  124 gattgcggttgtcgcgctgtgaattaatcacaacattgcacaacttttaaataatgataggaatgtaaataacttaacctagagatagatttgaagttct 223  Q
    |||||||||||| ||| ||||||||||||||||||||||||| || |||||||||||||  |||||||||||||||| ||| ||||||||||| ||||||    
T  25635893 gattgcggttgttgcggtgtgaattaatcacaacattgcacacctcttaaataatgataataatgtaaataacttaaactaaagatagatttggagttct 25635992  T
Q  224 aaactagataaggaaataacagtatgtaatttataatcaagtatgtagtaaaaatatgattttcatctatcttaattgaaaagatac 310  Q
    |||||||| ||||| |||||| |||||||||||| || || |||||| |||| ||||||||||||||||| | ||||||||| ||||    
T  25635993 aaactagacaaggagataacattatgtaatttatgattaaatatgtactaaagatatgattttcatctatttcaattgaaaaaatac 25636079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 3e-45
Query Start/End: Original strand, 119 - 304
Target Start/End: Original strand, 39653441 - 39653626
Alignment:
Q  119 ttatagattgcggttgtcgcgctgtgaattaatcacaacattgcacaacttttaaataatgataggaatgtaaataacttaacctagagatagatttgaa 218  Q
    |||| ||||| |||||| ||| |||||||||||||||| ||| ||||||| |||||||||||||| || ||||||||||||| ||||| ||| | ||| |    
T  39653441 ttatggattgtggttgttgcggtgtgaattaatcacaatattccacaactcttaaataatgatagcaacgtaaataacttaaactagatataaagttgga 39653540  T
Q  219 gttctaaactagataaggaaataacagtatgtaatttataatcaagtatgtagtaaaaatatgattttcatctatcttaattgaaa 304  Q
    |||||||||||||||| || |||||| |||||||||||| ||||| |||||| |||||||||||| ||||||||| | ||||||||    
T  39653541 gttctaaactagataaagagataacattatgtaatttatgatcaaatatgtactaaaaatatgatgttcatctatttcaattgaaa 39653626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 120 - 305
Target Start/End: Original strand, 47363689 - 47363874
Alignment:
Q  120 tatagattgcggttgtcgcgctgtgaattaatcacaacattgcacaacttttaaataatgataggaatgtaaataacttaacctagagatagatttgaag 219  Q
    |||| ||||||||||||  | ||||||||||||| |||||||||||| | |||||||||||||  ||  |||||||||||| ||||||| ||||||||||    
T  47363689 tataaattgcggttgtcttggtgtgaattaatcaaaacattgcacaagtcttaaataatgataataacttaaataacttaaactagagaaagatttgaag 47363788  T
Q  220 ttctaaactagataaggaaataacagtatgtaatttataatcaagtatgtagtaaaaatatgattttcatct-atcttaattgaaaa 305  Q
    |||||||||||||||||| |||||  |||||||| ||| ||||| |||||| |||||||||| ||||||||| |||| |||||||||    
T  47363789 ttctaaactagataaggagataac-ttatgtaatctatgatcaaatatgtactaaaaatatgcttttcatctaatctcaattgaaaa 47363874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 197 - 305
Target Start/End: Original strand, 10493472 - 10493579
Alignment:
Q  197 ttaacctagagatagatttgaagttctaaactagataaggaaataacagtatgtaatttataatcaagtatgtagtaaaaatatgattttcatctatctt 296  Q
    |||| |||||||| |||||| || ||||||||| ||||||| |||||| |||||||||||| ||||| |||| | ||||||||||| ||||||| ||||     
T  10493472 ttaaactagagatggatttggaggtctaaactatataaggagataacattatgtaatttatgatcaaatatgcattaaaaatatga-tttcatccatctc 10493570  T
Q  297 aattgaaaa 305  Q
    |||||||||    
T  10493571 aattgaaaa 10493579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 141 - 200
Target Start/End: Original strand, 10493376 - 10493435
Alignment:
Q  141 tgtgaattaatcacaacattgcacaacttttaaataatgataggaatgtaaataacttaa 200  Q
    |||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||    
T  10493376 tgtgaattaatcacaacattgcacaactcttaaataatgatagtaacgtaaataacttaa 10493435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 119 - 305
Target Start/End: Complemental strand, 33049311 - 33049115
Alignment:
Q  119 ttatagattgcggttgtcgcgctgtgaattaatcacaacattgcacaacttttaaataatg-ataggaatgtaaataacttaacctagagatagatttga 217  Q
    |||| ||||| ||| |||| | ||||||||||||| |||||||||||||| |||||||||| |||  ||  |||||||||| |  |||||||||||||||    
T  33049311 ttatggattgtggtcgtcgaggtgtgaattaatcaaaacattgcacaactcttaaataatgtataataacttaaataacttgaaatagagatagatttga 33049212  T
Q  218 agttctaaactagat----------aaggaaataacagtatgtaatttataatcaagtatgtagtaaaaatatgattttcatctatcttaattgaaaa 305  Q
    |||| ||||||||||          ||||| |||||  | ||||||||||  |||| |||||| ||||||| ||||||||||| |||| |||||||||    
T  33049211 agtt-taaactagataaagagcataaaggagataaccttctgtaatttatgttcaaatatgtactaaaaatgtgattttcatccatctcaattgaaaa 33049115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 124 - 209
Target Start/End: Original strand, 7493053 - 7493138
Alignment:
Q  124 gattgcggttgtcgcgctgtgaattaatcacaacattgcacaacttttaaataatgataggaatgtaaataacttaacctagagat 209  Q
    ||||| |||| || || |||||||||||||||||||| ||||||| |||||||||||||| || |||||||| |||| ||||||||    
T  7493053 gattgtggttatcacggtgtgaattaatcacaacattacacaactcttaaataatgatagtaacgtaaataatttaaactagagat 7493138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 314 - 381
Target Start/End: Original strand, 47363963 - 47364030
Alignment:
Q  314 aacggtaacgtcggctacctatactttttgtcgccgcctttttctcggtaatggaccattttttaaaa 381  Q
    |||||||||||| |||||||||||||||||| |  |||||||||||||||| ||||| ||||||||||    
T  47363963 aacggtaacgtccgctacctatactttttgtggtggcctttttctcggtaacggaccgttttttaaaa 47364030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 212 - 277
Target Start/End: Complemental strand, 45435484 - 45435419
Alignment:
Q  212 atttgaagttctaaactagataaggaaataacagtatgtaatttataatcaagtatgtagtaaaaa 277  Q
    ||||||||||||||||||||||| || |||||| |||||||||||| ||||| |||||| ||||||    
T  45435484 atttgaagttctaaactagataaagagataacattatgtaatttatgatcaaatatgtactaaaaa 45435419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 234
Target Start/End: Complemental strand, 31743052 - 31742958
Alignment:
Q  141 tgtgaattaatcacaacattgcacaacttttaaataatg-ataggaatgtaaataacttaacctagagatagatttgaagttctaaactagataa 234  Q
    |||||||||||||||||||||||||  | |||||||||| |||  ||  ||||||||||||  ||||||||||||||||||| | || |||||||    
T  31743052 tgtgaattaatcacaacattgcacagttcttaaataatgtataataacttaaataacttaaattagagatagatttgaagttttgaagtagataa 31742958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 125 - 223
Target Start/End: Complemental strand, 45435603 - 45435503
Alignment:
Q  125 attgcggttgtcgcgctgtgaattaatcacaacattgcacaacttttaaataatgataggaatgtaa--ataacttaacctagagatagatttgaagttc 222  Q
    ||||| ||| ||||| ||||||||||| |||| ||||||||||| ||||||||| |||| |||| ||  |||||||||  | |||||| |||||||||||    
T  45435603 attgcagttatcgcggtgtgaattaataacaatattgcacaactcttaaataataatagtaatggaaatataacttaaattggagataaatttgaagttc 45435504  T
Q  223 t 223  Q
    |    
T  45435503 t 45435503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 3e-48; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 3e-48
Query Start/End: Original strand, 123 - 305
Target Start/End: Original strand, 37794640 - 37794821
Alignment:
Q  123 agattgcggttgtcgcgctgtgaattaatcacaacattgcacaacttttaaataatgataggaatgtaaataacttaacctagagatagatttgaagttc 222  Q
    ||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||| ||  || ||||||||  | ||||| ||||||| |||||    
T  37794640 agattgcggttgtcgtggtgtgaattaatcacaacattgcacaactcttaaataatgatagtaacttagataacttagaccagagaaagatttggagttc 37794739  T
Q  223 taaactagataaggaaataacagtatgtaatttataatcaagtatgtagtaaaaatatgattttcatctatcttaattgaaaa 305  Q
    ||||||||||||||| |||||  |||||||||||| ||||| |||||| |||||||||||||||| ||||||| |||||||||    
T  37794740 taaactagataaggagataac-ttatgtaatttatgatcaaatatgtactaaaaatatgattttcttctatctcaattgaaaa 37794821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 1e-47
Query Start/End: Original strand, 124 - 305
Target Start/End: Original strand, 17988977 - 17989157
Alignment:
Q  124 gattgcggttgtcgcgctgtgaattaatcacaacattgcacaacttttaaataatgataggaatgtaaataacttaacctagagatagatttgaagttct 223  Q
    |||||||||||||| | |||||||||||||||| ||||||||||| |||||||||||||| ||  |||||||||||| ||||| | ||||||| ||||||    
T  17988977 gattgcggttgtcgaggtgtgaattaatcacaatattgcacaactcttaaataatgatagtaacttaaataacttaaactagaaaaagatttggagttct 17989076  T
Q  224 aaactagataaggaaataacagtatgtaatttataatcaagtatgtagtaaaaatatgattttcatctatcttaattgaaaa 305  Q
    |||||||||||||| |||| | ||| |||||||| ||||| |||||| ||||||||||||||||||| |||| |||||||||    
T  17989077 aaactagataaggagataa-attatataatttatgatcaaatatgtactaaaaatatgattttcatcgatctcaattgaaaa 17989157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 1e-35
Query Start/End: Original strand, 45 - 242
Target Start/End: Complemental strand, 5430407 - 5430210
Alignment:
Q  45 ttttaaacaacggtcgcggtcaaggtccaggtcgtgtatatgatttcaccatttcggccgttacatatattgtattatagattgcggttgtcgcgctgtg 144  Q
    ||||||| || |||||||  ||| |||  ||||| ||||||||||| || |||||||  |||||  || ||| |||| |||||| |||||||||| ||||    
T  5430407 ttttaaataatggtcgcgaacaatgtcgcggtcgcgtatatgattttacgatttcggttgttacggatgttgcattacagattgtggttgtcgcggtgtg 5430308  T
Q  145 aattaatcacaacattgcacaacttttaaataatgataggaatgtaaataacttaacctagagatagatttgaagttctaaactagataaggaaataa 242  Q
    |||||||||||| ||||||||||| |||||||||||||| ||  |||||||||||| ||||||||||| ||| | ||||||| |||||||||| ||||    
T  5430307 aattaatcacaatattgcacaactcttaaataatgatagtaacataaataacttaaactagagatagagttggatttctaaagtagataaggagataa 5430210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 125 - 215
Target Start/End: Complemental strand, 19263911 - 19263821
Alignment:
Q  125 attgcggttgtcgcgctgtgaattaatcacaacattgcacaacttttaaataatgataggaatgtaaataacttaacctagagatagattt 215  Q
    ||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||| ||  |||||||||||  ||||||||||||||    
T  19263911 attgcggttgttgcgctgtgaattaatcacaacattgcacaattcttaaataatgatagtaacataaataacttatactagagatagattt 19263821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 127 - 199
Target Start/End: Original strand, 35016316 - 35016388
Alignment:
Q  127 tgcggttgtcgcgctgtgaattaatcacaacattgcacaacttttaaataatgataggaatgtaaataactta 199  Q
    ||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||| ||  |||||||||||    
T  35016316 tgcggttgtcgcggtgtgaattaatcacaacattacacaactcttaaataatgatagtaacttaaataactta 35016388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 210 - 295
Target Start/End: Original strand, 35016457 - 35016541
Alignment:
Q  210 agatttgaagttctaaactagataaggaaataacagtatgtaatttataatcaagtatgtagtaaaaatatgattttcatctatct 295  Q
    ||||||| | |||||||||||||||||| |||||  ||| |||||||| ||||| ||||||  |||||||||||||||||||||||    
T  35016457 agatttggaattctaaactagataaggagataact-tatataatttatgatcaaatatgtatcaaaaatatgattttcatctatct 35016541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 304
Target Start/End: Complemental strand, 5428699 - 5428641
Alignment:
Q  246 tatgtaatttataatcaagtatgtagtaaaaatatgattttcatctatcttaattgaaa 304  Q
    |||||||||||| ||||| |||||| ||| |||||||||||||||||||| ||||||||    
T  5428699 tatgtaatttatgatcaattatgtactaataatatgattttcatctatctcaattgaaa 5428641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 252 - 304
Target Start/End: Complemental strand, 19263824 - 19263772
Alignment:
Q  252 atttataatcaagtatgtagtaaaaatatgattttcatctatcttaattgaaa 304  Q
    |||||| ||||| |||||| |||||||||||||||||||||||| ||||||||    
T  19263824 atttatgatcaaatatgtattaaaaatatgattttcatctatctcaattgaaa 19263772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 165
Target Start/End: Complemental strand, 20929922 - 20929880
Alignment:
Q  123 agattgcggttgtcgcgctgtgaattaatcacaacattgcaca 165  Q
    |||| |||||||||||| |||||||||||||||||| ||||||    
T  20929922 agatcgcggttgtcgcggtgtgaattaatcacaacaatgcaca 20929880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 3e-45; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 3e-45
Query Start/End: Original strand, 124 - 305
Target Start/End: Original strand, 11783396 - 11783577
Alignment:
Q  124 gattgcggttgtcgcgctgtgaattaatcacaacattgcacaacttttaaataatgataggaatgtaaataacttaacctagagatagatttgaagttct 223  Q
    ||||| |||||||||  |||||| |||| |||||||||||||||| |||||||||||||| ||  |||| ||||||| | ||||||||||||| ||||||    
T  11783396 gattgtggttgtcgctttgtgaagtaattacaacattgcacaactcttaaataatgatagtaacataaagaacttaaacaagagatagatttggagttct 11783495  T
Q  224 aaactagataaggaaataacagtatgtaatttataatcaagtatgtagtaaaaatatgattttcatctatcttaattgaaaa 305  Q
    |||||||| ||||| | |||| | |||||||||| ||||| |||||| |||||||||||||||||||||||| |||||||||    
T  11783496 aaactagacaaggagacaacattgtgtaatttatgatcaaatatgtactaaaaatatgattttcatctatctcaattgaaaa 11783577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 144 - 305
Target Start/End: Complemental strand, 7299267 - 7299106
Alignment:
Q  144 gaattaatcacaacattgcacaacttttaaataatgataggaatgtaaataacttaacctagagatagatttgaagttctaaactagataaggaaataac 243  Q
    ||||||| |||||||||| |||||| |||||||| ||||| || ||||||||||||| ||||||||||||||||| ||||||| |||||||||| |||||    
T  7299267 gaattaaccacaacattgtacaactcttaaataacgatagtaacgtaaataacttaaactagagatagatttgaa-ttctaaagtagataaggagataac 7299169  T
Q  244 agtatgtaatttataatcaagtatgtagtaaaaatatgattttcatc-tatcttaattgaaaa 305  Q
    | |||||||||||| || || |||||| | |||||||| |||||||| ||||| |||||||||    
T  7299168 attatgtaatttatgattaaatatgtacttaaaatatggttttcatcgtatctcaattgaaaa 7299106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 316 - 385
Target Start/End: Complemental strand, 7298994 - 7298925
Alignment:
Q  316 cggtaacgtcggctacctatactttttgtcgccgcctttttctcggtaatggaccattttttaaaacctc 385  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||| ||||| ||||||||||||||    
T  7298994 cggtaacgtcggctaccgatactttttgtcgcggcctttttctcggtaacggaccgttttttaaaacctc 7298925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 53527228 - 53527191
Alignment:
Q  141 tgtgaattaatcacaacattgcacaacttttaaataat 178  Q
    ||||||||||||||||||||||||||||||||||||||    
T  53527228 tgtgaattaatcacaacattgcacaacttttaaataat 53527191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 2e-43; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 2e-43
Query Start/End: Original strand, 124 - 278
Target Start/End: Complemental strand, 12990694 - 12990541
Alignment:
Q  124 gattgcggttgtcgcgctgtgaattaatcacaacattgcacaacttttaaataatgataggaatgtaaataacttaacctagagatagatttgaagttct 223  Q
    |||||| ||||||||| ||||||||| |||||||||||||||||| |||||||||||||| ||  |||||||||||| ||||||| ||||||||||||||    
T  12990694 gattgcagttgtcgcggtgtgaattagtcacaacattgcacaactcttaaataatgatagtaacttaaataacttaaactagagaaagatttgaagttct 12990595  T
Q  224 aaactagataaggaaataacagtatgtaatttataatcaagtatgtagtaaaaat 278  Q
    |||||||||||||| |||| | |||||||||||| ||||| |||||| |||||||    
T  12990594 aaactagataaggagataa-attatgtaatttatgatcaaatatgtattaaaaat 12990541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 91; E-Value: 2e-43
Query Start/End: Original strand, 118 - 304
Target Start/End: Complemental strand, 34664964 - 34664779
Alignment:
Q  118 attatagattgcggttgtcgcgctgtgaattaatcacaacattgcacaacttttaaataatgataggaatgtaaataacttaacctagagatagatttga 217  Q
    ||||| ||||| ||||||| || | ||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||| ||| ||| |||| ||     
T  34664964 attatggattgtggttgtcacggtatgaattaattacaacattgcacaacttttaaataatgatagtaacgtaaataacttaaactatagacagatatgg 34664865  T
Q  218 agttctaaactagataaggaaataacagtatgtaatttataatcaagtatgtagtaaaaatatgattttcatctatcttaattgaaa 304  Q
    |||||||||||||||||| | |||||  |||||||||||| ||||| || ||| | |||||||||||||||||||||| ||||||||    
T  34664864 agttctaaactagataagaagataacgttatgtaatttatgatcaaatacgtact-aaaatatgattttcatctatctcaattgaaa 34664779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 124 - 310
Target Start/End: Original strand, 32617560 - 32617744
Alignment:
Q  124 gattgcggttgtcgcgctgtgaattaatcacaacattgcacaacttttaaataatgataggaatgtaaataacttaacctagagatagatttgaagttct 223  Q
    |||||||||||||||| ||| |||||||||||||||||||||||| |||||||| ||||| ||  | |||||||||| ||||||| |  |||  |||| |    
T  32617560 gattgcggttgtcgcggtgtaaattaatcacaacattgcacaactcttaaataacgatagtaacttgaataacttaaactagagaaatctttagagtt-t 32617658  T
Q  224 aaactagataaggaaataacagtatgtaatttataatcaagtatgtagtaaaaatatgattttcatctatcttaattgaaaagatac 310  Q
    |||||||||||||| |||||  |||||||||||| ||||| |||||| |||||||||||||||||||||||| ||||||||| ||||    
T  32617659 aaactagataaggagataac-ttatgtaatttatgatcaaatatgtactaaaaatatgattttcatctatctcaattgaaaaaatac 32617744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 4e-32
Query Start/End: Original strand, 124 - 305
Target Start/End: Complemental strand, 9457794 - 9457617
Alignment:
Q  124 gattgcggttgtcgcgctgtgaattaatcacaacattgcacaacttttaaataatgataggaatgtaaataacttaacctagagatagatttgaagttct 223  Q
    |||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||| ||  |||||||||||| |||||   ||||||  ||||||    
T  9457794 gattgcggttgttgcggtgtgaattaatcacaacattgcacaactcttaaataatgatagtaacttaaataacttaaactaga---agattttgagttct 9457698  T
Q  224 aaactagataaggaaataacagtatgtaatttataatcaagtatgtagtaaaaatatgattttcatctatcttaattgaaaa 305  Q
    |||| || |||||| |||||  |  ||||||||| ||||  ||||||  |||||||||||||| |||||||| |||||||||    
T  9457697 aaacaaggtaaggagataac-ttgagtaatttatgatcagatatgtatcaaaaatatgatttttatctatctcaattgaaaa 9457617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 4e-32
Query Start/End: Original strand, 124 - 305
Target Start/End: Complemental strand, 9461891 - 9461714
Alignment:
Q  124 gattgcggttgtcgcgctgtgaattaatcacaacattgcacaacttttaaataatgataggaatgtaaataacttaacctagagatagatttgaagttct 223  Q
    |||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||| ||  |||||||||||| |||||   ||||||  ||||||    
T  9461891 gattgcggttgttgcggtgtgaattaatcacaacattgcacaactcttaaataatgatagtaacttaaataacttaaactaga---agattttgagttct 9461795  T
Q  224 aaactagataaggaaataacagtatgtaatttataatcaagtatgtagtaaaaatatgattttcatctatcttaattgaaaa 305  Q
    |||| || |||||| |||||  |  ||||||||| ||||  ||||||  |||||||||||||| |||||||| |||||||||    
T  9461794 aaacaaggtaaggagataac-ttgagtaatttatgatcagatatgtatcaaaaatatgatttttatctatctcaattgaaaa 9461714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 130 - 305
Target Start/End: Original strand, 14081707 - 14081872
Alignment:
Q  130 ggttgtcgcgctgtgaattaatcacaacattgcacaacttttaaataatgataggaatgtaaataacttaacctagagatagatttgaagttctaaacta 229  Q
    |||||||||  |||| |||||||||||||||||| |||||||||||||||  || ||  |||||||||||| |||||||||||||     ||||||| ||    
T  14081707 ggttgtcgcagtgtgcattaatcacaacattgcataacttttaaataatg--agcaacttaaataacttaaactagagatagatt-----ttctaaatta 14081799  T
Q  230 gataaggaaataacagt-atgtaatttataatcaagtatgtagtaaaaatatgattttcatctatcttaattgaaaa 305  Q
    ||||| || |||||| | ||||||||    ||||| ||| || ||||||| |||||||||||||||| |||||||||    
T  14081800 gataatgagataacattaatgtaatt----atcaaatatatactaaaaatttgattttcatctatctcaattgaaaa 14081872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 314 - 385
Target Start/End: Original strand, 32617859 - 32617931
Alignment:
Q  314 aacggtaacgtcggctacctatac-tttttgtcgccgcctttttctcggtaatggaccattttttaaaacctc 385  Q
    |||||||||||| ||||||||||| ||||||| || ||||||||||||||||  |||| ||||||||||||||    
T  32617859 aacggtaacgtccgctacctatacctttttgtggcggcctttttctcggtaaccgaccgttttttaaaacctc 32617931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 314 - 384
Target Start/End: Complemental strand, 9457517 - 9457446
Alignment:
Q  314 aacggtaacgtcggctacctatac-tttttgtcgccgcctttttctcggtaatggaccattttttaaaacct 384  Q
    ||||| |||||| ||| ||||||| |||||||||| ||||||| |||||||| | |||||||||||||||||    
T  9457517 aacggcaacgtccgctgcctatacctttttgtcgcggccttttactcggtaacgaaccattttttaaaacct 9457446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 314 - 384
Target Start/End: Complemental strand, 9461614 - 9461543
Alignment:
Q  314 aacggtaacgtcggctacctatac-tttttgtcgccgcctttttctcggtaatggaccattttttaaaacct 384  Q
    ||||| |||||| ||| ||||||| |||||||||| ||||||| |||||||| | |||||||||||||||||    
T  9461614 aacggcaacgtccgctgcctatacctttttgtcgcggccttttactcggtaacgaaccattttttaaaacct 9461543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 314 - 383
Target Start/End: Complemental strand, 12990214 - 12990144
Alignment:
Q  314 aacggtaacgtcggctacctatac-tttttgtcgccgcctttttctcggtaatggaccattttttaaaacc 383  Q
    ||||||||||||  |||||||||| ||||| |||| |||||||||||||||| | ||| ||||||||||||    
T  12990214 aacggtaacgtccactacctatacctttttatcgcagcctttttctcggtaacgaaccgttttttaaaacc 12990144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 305
Target Start/End: Original strand, 24699887 - 24699966
Alignment:
Q  226 actagataaggaaataacagtatgtaatttataatcaagtatgtagtaaaaatatgattttcatctatcttaattgaaaa 305  Q
    |||||||||  | |||||| |||||||| ||| ||||| ||| ||  |||||||| |||||||||||||| |||||||||    
T  24699887 actagataaaaagataacattatgtaatatattatcaaatatatacgaaaaatataattttcatctatctcaattgaaaa 24699966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 159
Target Start/End: Complemental strand, 963139 - 963102
Alignment:
Q  122 tagattgcggttgtcgcgctgtgaattaatcacaacat 159  Q
    |||||||||||||||| | |||||||||||||||||||    
T  963139 tagattgcggttgtcgtggtgtgaattaatcacaacat 963102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 4e-41; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 127 - 305
Target Start/End: Original strand, 23489962 - 23490139
Alignment:
Q  127 tgcggttgtcgcgctgtgaattaatcacaacattgcacaacttttaaataatgataggaatgtaaataacttaacctagagatagatttgaagttctaaa 226  Q
    ||||||||| ||| ||||||||||||||||||||| |||||| ||||||| |||||| ||  || | ||| ||| ||||||| ||||||| |||||||||    
T  23489962 tgcggttgttgcggtgtgaattaatcacaacattgtacaactcttaaatactgatagtaacttagacaacataaactagagaaagatttggagttctaaa 23490061  T
Q  227 ctagataaggaaataacagtatgtaatttataatcaagtatgtagtaaaaatatgattttcatctatcttaattgaaaa 305  Q
    ||||||||||| |||||  |||||||||||| ||||| ||||||  ||||||||||||||||||||||| |||||||||    
T  23490062 ctagataaggagataac-ttatgtaatttatgatcaaatatgtacgaaaaatatgattttcatctatctcaattgaaaa 23490139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 124 - 213
Target Start/End: Complemental strand, 13402262 - 13402173
Alignment:
Q  124 gattgcggttgtcgcgctgtgaattaatcacaacattgcacaacttttaaataatgataggaatgtaaataacttaacctagagatagat 213  Q
    |||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||| || ||||||||||||| ||| | ||||||    
T  13402262 gattgcggttgtcgcggtgtgaattaatcacaacattacacaactcttaaataatgatagtaaggtaaataacttaaactaaaaatagat 13402173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 119 - 200
Target Start/End: Complemental strand, 13396969 - 13396888
Alignment:
Q  119 ttatagattgcggttgtcgcgctgtgaattaatcacaacattgcacaacttttaaataatgataggaatgtaaataacttaa 200  Q
    |||| |||||||| ||||||| |||||||||||||||||||| ||||||| |||||||||||||| || |||||||||||||    
T  13396969 ttatggattgcggctgtcgcggtgtgaattaatcacaacattacacaactcttaaataatgatagtaaggtaaataacttaa 13396888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 127 - 305
Target Start/End: Original strand, 7154249 - 7154439
Alignment:
Q  127 tgcggttgtcgcgctgtgaattaatcacaacattgcacaa--ctt----------ttaaataatgataggaatgtaaataacttaacctagagatagatt 214  Q
    ||||||||||| | ||||||||||||||||||||||||||  |||          |||||||||||||  |  ||||||||||||| | | |||||||||    
T  7154249 tgcggttgtcgtgatgtgaattaatcacaacattgcacaagtcttaaataaagtcttaaataatgataataccgtaaataacttaaaccatagatagatt 7154348  T
Q  215 tgaagttctaaactagataaggaaataacagtatgtaatttataatcaagtatgtagtaaaaatatgattttcatctatcttaattgaaaa 305  Q
    |  |||||| ||  ||||||||| |||  | |||||||| ||| ||||| |||||| ||||||||||||||||||||||||| ||| ||||    
T  7154349 ttgagttctgaatcagataaggagatataattatgtaatatatgatcaaatatgtattaaaaatatgattttcatctatcttcatttaaaa 7154439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 182
Target Start/End: Complemental strand, 14370856 - 14370805
Alignment:
Q  131 gttgtcgcgctgtgaattaatcacaacattgcacaacttttaaataatgata 182  Q
    ||||||| | |||||||||||||||||||||||||||| |||  ||||||||    
T  14370856 gttgtcgtggtgtgaattaatcacaacattgcacaactcttacttaatgata 14370805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 305
Target Start/End: Original strand, 14867365 - 14867423
Alignment:
Q  247 atgtaatttataatcaagtatgtagtaaaaatatgattttcatctatcttaattgaaaa 305  Q
    |||||||||||  |||| |||||| ||||||| ||||||||||| |||| |||||||||    
T  14867365 atgtaatttatgttcaaatatgtactaaaaatgtgattttcatccatctcaattgaaaa 14867423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 384
Target Start/End: Original strand, 14867560 - 14867618
Alignment:
Q  327 gctacctata-ctttttgtcgccgcctttttctcggtaatggaccattttttaaaacct 384  Q
    |||||||||| |||| |||||| ||||||||||| |||| ||||| |||||||||||||    
T  14867560 gctacctatatctttctgtcgcggcctttttctcagtaacggaccgttttttaaaacct 14867618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 382
Target Start/End: Original strand, 23490243 - 23490309
Alignment:
Q  317 ggtaacgtcggctacctatac-tttttgtcgccgcctttttctcggtaatggaccattttttaaaac 382  Q
    |||||| |||||||||||||| |||||||||| ||||||||||| |||| ||||  || ||||||||    
T  23490243 ggtaacttcggctacctatacctttttgtcgcggcctttttctcagtaacggacggttctttaaaac 23490309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 4e-38; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 130 - 303
Target Start/End: Complemental strand, 41283664 - 41283493
Alignment:
Q  130 ggttgtcgcgctgtgaattaatcacaacattgcacaacttttaaataatgataggaatgtaaataacttaacctagagatagatttgaagttctaaacta 229  Q
    |||||||| | ||||||||||||||||||||||||||||||| ||||| ||||| ||  |||||||||||| ||||||| ||||||||||||||||||||    
T  41283664 ggttgtcgtggtgtgaattaatcacaacattgcacaacttttgaataaagatagtaacataaataacttaaactagagaaagatttgaagttctaaacta 41283565  T
Q  230 gataaggaaataacagtatgtaatttataatcaagtatgtagtaaaaatatgattttcatctatcttaattgaa 303  Q
    |||||||| |||||  ||| |||||||| ||||  | |||| |||||||  ||||||||||||||| |||||||    
T  41283564 gataaggagataac-ttat-taatttatgatcagatttgtactaaaaatgggattttcatctatctcaattgaa 41283493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 6e-37
Query Start/End: Original strand, 131 - 305
Target Start/End: Original strand, 39426087 - 39426260
Alignment:
Q  131 gttgtcgcgctgtgaattaatcacaacattgcacaacttttaaataatgataggaatgtaaataacttaacctagagatagatttgaagttctaaactag 230  Q
    ||||||||| ||||||||||| ||||||||||||||||  || ||| |||||| ||||||||||||||||  || ||||| ||||| | ||||||||||     
T  39426087 gttgtcgcggtgtgaattaattacaacattgcacaactcatacatattgatagtaatgtaaataacttaa-atatagatatatttgga-ttctaaactat 39426184  T
Q  231 ataaggaaataacagtatgtaatttataatcaagtatgtagtaaaa-atatgattttcatctatcttaattgaaaa 305  Q
    ||||||| || ||| |||||||||||| ||||| |||||| ||||| |||||||||||||||||||||||||||||    
T  39426185 ataaggagatgacattatgtaatttatgatcaaatatgtactaaaatatatgattttcatctatcttaattgaaaa 39426260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 1e-35
Query Start/End: Original strand, 131 - 305
Target Start/End: Original strand, 22927061 - 22927236
Alignment:
Q  131 gttgtcgcgctgtgaattaatcacaacattgcacaacttttaaataatgataggaatgtaaataacttaacctagagatagatttgaagttctaaactag 230  Q
    |||||||||  ||||||||||||||||||||| ||||| ||||||||||| || ||  |||||||||||| ||||||||||||| || ||||||||||||    
T  22927061 gttgtcgcgacgtgaattaatcacaacattgcccaactcttaaataatgaaagtaacataaataacttaaactagagatagattcgaggttctaaactag 22927160  T
Q  231 ataaggaaataacagtatgtaatttataatcaa--gtatgtagtaaaaatatgattttcatctatcttaattgaaaa 305  Q
    | || || |||||| ||||| |||||| |||||  || ||||  ||||||||||||||||||||||| |||||||||    
T  22927161 acaatgagataaca-tatgtgatttatgatcaaatgtgtgtacaaaaaatatgattttcatctatctcaattgaaaa 22927236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 124 - 305
Target Start/End: Complemental strand, 36491666 - 36491494
Alignment:
Q  124 gattgcggttgtcgcgctgtgaattaatcacaacattgcacaacttttaaataatgataggaatgtaaataacttaacctagagatagatttgaagttct 223  Q
    |||| |||||||| || ||||||||||||| ||||||||| || | |||||| ||||||| || ||||||||| ||| ||||||||||||||  ||||||    
T  36491666 gattacggttgtcacggtgtgaattaatcataacattgcaaaattcttaaatgatgatagtaaagtaaataacataaactagagatagattttgagttct 36491567  T
Q  224 aaactagataaggaaataacagtatgtaatttataatcaagtatgtagtaaaaatatgattttcatctatcttaattgaaaa 305  Q
    ||||||||| |||||  ||||         |||| || || |||||| ||||||||||||||||||||||||||||||||||    
T  36491566 aaactagatgaggaaccaaca---------ttatgattaaatatgtactaaaaatatgattttcatctatcttaattgaaaa 36491494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 131 - 305
Target Start/End: Original strand, 13424636 - 13424806
Alignment:
Q  131 gttgtcgcgctgtgaattaatcacaacattgcacaacttttaaataatgataggaatgtaaataacttaacctagagatagatttgaagttctaaactag 230  Q
    ||||||| | |||||||||||||||||||||||||||| |||||||||||    ||  ||||||||||||  |||||| ||||||  | ||||||| |||    
T  13424636 gttgtcgtggtgtgaattaatcacaacattgcacaactcttaaataatga----aacttaaataacttaaaatagagaaagatttagaattctaaaatag 13424731  T
Q  231 a-taaggaaataacagtatgtaatttataatcaagtatgtagtaaaaatatgattttcatctatcttaattgaaaa 305  Q
    | |||||| |||||  || || |||||| ||||| |||||| ||||||||| |||||||| ||| | |||||||||    
T  13424732 attaaggagataac-ttacgtgatttatgatcaaatatgtactaaaaatattattttcatttatttcaattgaaaa 13424806  T

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Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 318 - 384
Target Start/End: Original strand, 13424887 - 13424954
Alignment:
Q  318 gtaacgtcggctacctatac-tttttgtcgccgcctttttctcggtaatggaccattttttaaaacct 384  Q
    ||||| |||||||||||||| ||||| |||| | |||||||||||||||||||||| |||||||||||    
T  13424887 gtaacatcggctacctatacctttttttcgcggtctttttctcggtaatggaccatattttaaaacct 13424954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 314 - 384
Target Start/End: Complemental strand, 19967383 - 19967312
Alignment:
Q  314 aacggtaacgtcggctacctatac-tttttgtcgccgcctttttctcggtaatggaccattttttaaaacct 384  Q
    ||||||||| |||||||||| ||| |||||| ||  |||||||||||||||||||||  |||||||||||||    
T  19967383 aacggtaacttcggctacctgtacctttttgccgtggcctttttctcggtaatggactgttttttaaaacct 19967312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 246 - 305
Target Start/End: Original strand, 16341523 - 16341584
Alignment:
Q  246 tatgtaatttata--atcaagtatgtagtaaaaatatgattttcatctatcttaattgaaaa 305  Q
    |||||||||||||  ||||| |||||| |||||||||| ||||||||||||| |||||||||    
T  16341523 tatgtaatttatatgatcaaatatgtactaaaaatatgtttttcatctatctcaattgaaaa 16341584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 163
Target Start/End: Complemental strand, 19967749 - 19967627
Alignment:
Q  41 aaggttttaaacaacggtcgcggtcaaggtccaggtcgtgtatatgatttcaccatttcggccgttacatatattgtattatagattgcggttgtcgcgc 140  Q
    ||||||||||| ||||||||| ||||||||| |||| | | ||| |||||| | |||||||||||||    | ||| |  |  |||||||||||||||      
T  19967749 aaggttttaaataacggtcgcagtcaaggtcgaggttgcggataggatttcgcgatttcggccgttatgggtgttgcaacactgattgcggttgtcgcag 19967650  T
Q  141 tgtgaattaatcacaacattgca 163  Q
    || ||||||||||||||||||||    
T  19967649 tgagaattaatcacaacattgca 19967627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 166
Target Start/End: Complemental strand, 37247695 - 37247652
Alignment:
Q  123 agattgcggttgtcgcgctgtgaattaatcacaacattgcacaa 166  Q
    |||||| |||||||||| |||||||||||||||||| |||||||    
T  37247695 agattgtggttgtcgcggtgtgaattaatcacaacaatgcacaa 37247652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 314 - 384
Target Start/End: Complemental strand, 41283365 - 41283294
Alignment:
Q  314 aacggtaacgtcggctacctatact-ttttgtcgccgcctttttctcggtaatggaccattttttaaaacct 384  Q
    |||||||||||| |||||||||||| ||||||| |  |||||||||  |||| ||||| |||||||||||||    
T  41283365 aacggtaacgtccgctacctatacttttttgtcacgacctttttcttagtaacggaccgttttttaaaacct 41283294  T

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Target: chr6 (Bit Score: 75; Significance: 6e-34; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 136 - 305
Target Start/End: Complemental strand, 9177760 - 9177588
Alignment:
Q  136 cgcgctgtgaattaatcacaacattgcacaacttttaaataatgataggaatgtaaataacttaacctagagatagatttgaagttctaaactagataag 235  Q
    |||| |||||||||||||||||||||||||||| || ||||||||||| || ||||||||||||| ||| ||||||||||| ||||||||||||| |       
T  9177760 cgcggtgtgaattaatcacaacattgcacaactcttgaataatgatagtaacgtaaataacttaaactaaagatagatttggagttctaaactaggt--- 9177664  T
Q  236 gaaataacagtatgtaatttat------aatcaagtatgtagtaaaaatatgattttcatctatcttaattgaaaa 305  Q
    || |||||| ||||||||||||      | |||| |||||| ||||||||||||||||||| |||| |||||||||    
T  9177663 gagataacattatgtaatttatgatcaaattcaaatatgtactaaaaatatgattttcatcaatctcaattgaaaa 9177588  T

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Target: chr6; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 125 - 244
Target Start/End: Original strand, 26660607 - 26660726
Alignment:
Q  125 attgcggttgtcgcgctgtgaattaatcacaacattgcacaacttttaaataatgataggaatgtaaataacttaacctagagatagatttgaagttcta 224  Q
    |||||||||||| || |||||||||||||||||||||||||||| |||||| |  |||| ||  ||||||| |||| ||| ||| ||||||| |||||||    
T  26660607 attgcggttgtcacggtgtgaattaatcacaacattgcacaactcttaaatcacaatagtaacttaaataatttaaactaaagaaagatttggagttcta 26660706  T
Q  225 aactagataaggaaataaca 244  Q
    ||||| | ||||| ||||||    
T  26660707 aactatacaaggagataaca 26660726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 125 - 244
Target Start/End: Original strand, 26766578 - 26766697
Alignment:
Q  125 attgcggttgtcgcgctgtgaattaatcacaacattgcacaacttttaaataatgataggaatgtaaataacttaacctagagatagatttgaagttcta 224  Q
    |||||||||||| || |||||||||||||||||||||||||||| |||||| |  |||| ||  ||||||| |||| ||| ||| ||||||| |||||||    
T  26766578 attgcggttgtcacggtgtgaattaatcacaacattgcacaactcttaaatcacaatagtaacttaaataatttaaactaaagaaagatttggagttcta 26766677  T
Q  225 aactagataaggaaataaca 244  Q
    ||||| | ||||| ||||||    
T  26766678 aactatacaaggagataaca 26766697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 223 - 305
Target Start/End: Complemental strand, 32296445 - 32296363
Alignment:
Q  223 taaactagataaggaaataacagtatgtaatttataatcaagtatgtagtaaaaatatgattttcatctatcttaattgaaaa 305  Q
    ||||||| ||||||| ||| || ||||||| |||| ||||| |||||| |||||||||||||||||||||||| |||||||||    
T  32296445 taaactatataaggagataccattatgtaacttatgatcaaatatgtactaaaaatatgattttcatctatctcaattgaaaa 32296363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 212 - 288
Target Start/End: Complemental strand, 10117259 - 10117185
Alignment:
Q  212 atttgaagttctaaactagataaggaaataacagtatgtaatttataatcaagtatgtagtaaaaatatgattttca 288  Q
    ||||| |||||||||||||||||||| || |   |||||||||||| ||||| |||||| |||||||||||||||||    
T  10117259 atttggagttctaaactagataaggagattat--tatgtaatttatgatcaaatatgtactaaaaatatgattttca 10117185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 314 - 384
Target Start/End: Original strand, 8169240 - 8169310
Alignment:
Q  314 aacggtaacgtcggctacctatactttttgtcgccgcctttttctcggtaatggaccattttttaaaacct 384  Q
    ||||||||||||| |||||||||| ||||||||   ||||||||||||||| || |  |||||||||||||    
T  8169240 aacggtaacgtcgactacctataccttttgtcgtgacctttttctcggtaacgggcagttttttaaaacct 8169310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 166
Target Start/End: Complemental strand, 9771975 - 9771928
Alignment:
Q  119 ttatagattgcggttgtcgcgctgtgaattaatcacaacattgcacaa 166  Q
    |||| ||||| ||| |||||| ||||||||||||||||||||||||||    
T  9771975 ttatggattgtggtcgtcgcgttgtgaattaatcacaacattgcacaa 9771928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0989 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold0989
Description:

Target: scaffold0989; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 382
Target Start/End: Original strand, 2119 - 2165
Alignment:
Q  336 actttttgtcgccgcctttttctcggtaatggaccattttttaaaac 382  Q
    |||||||||||| ||||||||||||||||  |||| |||||||||||    
T  2119 actttttgtcgcggcctttttctcggtaacagaccgttttttaaaac 2165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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