View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18850_low_2 (Length: 713)
Name: NF18850_low_2
Description: NF18850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18850_low_2 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 661; Significance: 0; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 661; E-Value: 0
Query Start/End: Original strand, 7 - 699
Target Start/End: Complemental strand, 29253884 - 29253192
Alignment:
| Q |
7 |
tcgaagaatatattattcataaaatgagaatatataatcctgatcaagcaactttggaagcctcaagaggatctctcttatctcttgtcattggggtccc |
106 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29253884 |
tcgaacaaaatattattcataaaatgagaatatataatcctgatcaagcaactttggaagcctcaagaggatctctcttatctcttgtcattggggtccc |
29253785 |
T |
|
| Q |
107 |
taatgaagacattcaatcaatagccaacgatatttcatcagcaaataattgggtccaaaacaatatactaaaatacactccaggtgttaattttaggtac |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29253784 |
taatgaagacattcaatcaatagccaacgatatttcatcagcaaataattgggtccaaaacaatatactaaaatacactccaggtgttaattttaggtac |
29253685 |
T |
|
| Q |
207 |
attgttgttgggaatgaaataaatcccagtaatgacccaacatcacaatttgttcttcgtgcaatgcagaacatttattcagcacttgcatctgccaact |
306 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
29253684 |
attgttgttgggaatgaaataaatcctagtaatgacccaacatcacaatttgttcttcgtgcaatgcagaatatttattcagcacttgcatctgccaact |
29253585 |
T |
|
| Q |
307 |
tgcaaaatcaaattaagatttcaacagctataaatatgggtttgttgggaagctcgtatcctccatcagcaggagcatttagtgcttccgcaattccata |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29253584 |
tgcaaaatcaaattaagatttcaacagctataaatatgggtttgttgggaagctcgtatcctccatcagcaggagcatttagtgcttccgcaattccata |
29253485 |
T |
|
| Q |
407 |
tataacttcaatagttggttttcttgtgaacaccagggcaccacttcttgcaaatgtgtatccgtacttcacttatatcggtgatccacaaaacattcct |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
29253484 |
tataacttcaatagttggttttcttgtgaacaccgaggcaccacttcttgcaaatgtgcatccgtacttcgcttatatcggtgatccacaaaacattcct |
29253385 |
T |
|
| Q |
507 |
cttgattttgctctttttaaacaacaaggaaacaatgcagttggttatcaaaacctctttgatgcccagttagattcagtttatgccgctctcgagaaag |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29253384 |
cttgattttgctctttttaaacaacaaggaaacaatgcagttggttatcaaaacctctttgatgcccagttagattcagtttatgccgctctcgagaaag |
29253285 |
T |
|
| Q |
607 |
tgggcggttctagtgtgaagattgtagtgtctgagagtgggtggccatctgctggtggagatgtggcaacaattgagaatgctcgaacatact |
699 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29253284 |
tgggcggttctagtgtgaagattgtagtgtctgagagtgggtggccatctgctggtggagatgtggcaacaattgagaatgctcgaacatact |
29253192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 29 - 422
Target Start/End: Original strand, 29288033 - 29288426
Alignment:
| Q |
29 |
aatgagaatatataatcctgatcaagcaactttggaagcctcaagaggatctctcttatctcttgtcattggggtccctaatgaagacattcaatcaata |
128 |
Q |
| |
|
||||||||||||| |||||||||||||||| || || || |||||| ||| || ||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
29288033 |
aatgagaatatatgatcctgatcaagcaaccttagaggctctaagaggctctaatatagaacttgttattggggtccgtaatgaagacattcaatcaatt |
29288132 |
T |
|
| Q |
129 |
gccaacgatatttcatcagcaaataattgggtccaaaacaatatactaaaatacactccaggtgttaattttaggtacattgttgttgggaatgaaataa |
228 |
Q |
| |
|
||| | | |||||||||| | |||||||||||||||||| |||||||||||| ||| || || || ||||||||||||||||||||||||||||||| |
|
|
| T |
29288133 |
gcctatagtgtttcatcagctactaattgggtccaaaacaacatactaaaatactctcaagacgtaaagtttaggtacattgttgttgggaatgaaataa |
29288232 |
T |
|
| Q |
229 |
atcccagtaatgacccaacatcacaatttgttcttcgtgcaatgcagaacatttattcagcacttgcatctgccaacttgcaaaatcaaattaagatttc |
328 |
Q |
| |
|
|||| |||||||| |||||||| |||||||||| | ||||||||||||||||||| ||||||| |||||| |||| | ||||||||||||||| |||| |
|
|
| T |
29288233 |
atcctagtaatgatgcaacatcaaaatttgttctacttgcaatgcagaacatttatacagcactagcatcttccaatctacaaaatcaaattaaggtttc |
29288332 |
T |
|
| Q |
329 |
aacagctataaatatgggtttgttgggaagctcgtatcctccatcagcaggagcatttagtgcttccgcaattccatatataacttcaatagtt |
422 |
Q |
| |
|
|||||||||| | ||| |||||| ||||| || |||||||||||| ||||| ||||||| |||| ||||| ||||||||| | |||||||| |
|
|
| T |
29288333 |
aacagctatacaaatgaatttgttaggaagttcatatcctccatcacaaggagtatttagtccttcttcaatttcatatataattccaatagtt |
29288426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 444 - 668
Target Start/End: Original strand, 29225696 - 29225920
Alignment:
| Q |
444 |
gcaccacttcttgcaaatgtgtatccgtacttcacttatatcggtgatccacaaaacattcctcttgattttgctctttttaaacaacaaggaaacaatg |
543 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||||||| |||||| ||||||||||||||| | ||||||||||| ||||||||||||||||| |
|
|
| T |
29225696 |
gcaccacttcttgctaatgtgtatccgtacttcgcttatattggtgataaggtaaacattcctcttgactatgctctttttagacaacaaggaaacaatg |
29225795 |
T |
|
| Q |
544 |
cagttggttatcaaaacctctttgatgcccagttagattcagtttatgccgctctcgagaaagtgggcggttctagtgtgaagattgtagtgtctgagag |
643 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||| ||||| || |||||||| || ||||| |||| ||| |||| ||||| || ||||||||||| |
|
|
| T |
29225796 |
cagttggttaccaaaacctctttgatgcccaattagactcagtatacgccgctcttgaaaaagttggcgcttccggtgttaagatagttgtgtctgagag |
29225895 |
T |
|
| Q |
644 |
tgggtggccatctgctggtggagat |
668 |
Q |
| |
|
||||||||||||||||| ||||||| |
|
|
| T |
29225896 |
tgggtggccatctgctgctggagat |
29225920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 444 - 668
Target Start/End: Original strand, 29230360 - 29230584
Alignment:
| Q |
444 |
gcaccacttcttgcaaatgtgtatccgtacttcacttatatcggtgatccacaaaacattcctcttgattttgctctttttaaacaacaaggaaacaatg |
543 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||||||| | || ||||| |||| ||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
29230360 |
gcaccacttcttgccaatgtgtatccgtacttcgcttatatcaataataaacaaagcatttctcttgattatgctctttttagacaacaaggaaacaatc |
29230459 |
T |
|
| Q |
544 |
cagttggttatcaaaacctctttgatgcccagttagattcagtttatgccgctctcgagaaagtgggcggttctagtgtgaagattgtagtgtctgagag |
643 |
Q |
| |
|
||||||||| | |||||| ||||||||||||||||||||||| || || ||||| |||||||| |||| ||| |||||||||| || ||||| ||||| |
|
|
| T |
29230460 |
aagttggttaccgaaacctttttgatgcccagttagattcagtatacgctgctcttgagaaagttggcgcttccggtgtgaagatagttgtgtccgagag |
29230559 |
T |
|
| Q |
644 |
tgggtggccatctgctggtggagat |
668 |
Q |
| |
|
||||||||||||||| ||||||||| |
|
|
| T |
29230560 |
tgggtggccatctgcaggtggagat |
29230584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 444 - 668
Target Start/End: Original strand, 29240872 - 29241096
Alignment:
| Q |
444 |
gcaccacttcttgcaaatgtgtatccgtacttcacttatatcggtgatccacaaaacattcctcttgattttgctctttttaaacaacaaggaaacaatg |
543 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||||||||||| || |||| |||| ||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
29240872 |
gcaccacttcttgccaatgtgtatccgtacttcgcttatatcggtaataagcaaagcatttctcttgactatgctctttttaaacaacaaggaaacaatg |
29240971 |
T |
|
| Q |
544 |
cagttggttatcaaaacctctttgatgcccagttagattcagtttatgccgctctcgagaaagtgggcggttctagtgtgaagattgtagtgtctgagag |
643 |
Q |
| |
|
||||| || |||||||||||||||||||| ||||| ||||| ||||| ||||| |||||||| || ||| | ||||||||| || ||||| ||||| |
|
|
| T |
29240972 |
atgttgggtaccaaaacctctttgatgcccaattagactcagtatatgctgctcttgagaaagttgggggtaccgatgtgaagatagttgtgtccgagag |
29241071 |
T |
|
| Q |
644 |
tgggtggccatctgctggtggagat |
668 |
Q |
| |
|
||| |||||||||| |||||||||| |
|
|
| T |
29241072 |
tggatggccatctgatggtggagat |
29241096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 444 - 652
Target Start/End: Original strand, 29251146 - 29251354
Alignment:
| Q |
444 |
gcaccacttcttgcaaatgtgtatccgtacttcacttatatcggtgatccacaaaacattcctcttgattttgctctttttaaacaacaaggaaacaatg |
543 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||||||| ||| || ||||| |||| ||||||| | || |||||||||||||||||||||||||| |
|
|
| T |
29251146 |
gcaccacttcttgccaatgtgtatccgtacttcgcttatattggtaataaacaaagcatttctcttgactatgttctttttaaacaacaaggaaacaatg |
29251245 |
T |
|
| Q |
544 |
cagttggttatcaaaacctctttgatgcccagttagattcagtttatgccgctctcgagaaagtgggcggttctagtgtgaagattgtagtgtctgagag |
643 |
Q |
| |
|
|||||| || | ||| ||||||||||| |||||||||||| || || ||||| |||||||| || ||||| | ||||||||| || ||||| ||||| |
|
|
| T |
29251246 |
aagttgggtacaacaacatctttgatgccatgttagattcagtatacgctgctcttgagaaagttggaggttccaatgtgaagatagttgtgtccgagag |
29251345 |
T |
|
| Q |
644 |
tgggtggcc |
652 |
Q |
| |
|
||| ||||| |
|
|
| T |
29251346 |
tggatggcc |
29251354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 529 - 656
Target Start/End: Original strand, 29218460 - 29218587
Alignment:
| Q |
529 |
aacaaggaaacaatgcagttggttatcaaaacctctttgatgcccagttagattcagtttatgccgctctcgagaaagtgggcggttctagtgtgaagat |
628 |
Q |
| |
|
|||| ||||| |||| ||||||||| |||||| | |||||||| ||| |||||| ||||||| ||||| |||||||| || ||||| | ||||||||| |
|
|
| T |
29218460 |
aacagggaaagaatgaagttggttaccaaaacttgtttgatgcaatgttggattcaatttatgctgctcttgagaaagtagggggttcaaatgtgaagat |
29218559 |
T |
|
| Q |
629 |
tgtagtgtctgagagtgggtggccatct |
656 |
Q |
| |
|
||| |||||||||||||||||||||||| |
|
|
| T |
29218560 |
tgttgtgtctgagagtgggtggccatct |
29218587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 16 - 124
Target Start/End: Complemental strand, 29440745 - 29440636
Alignment:
| Q |
16 |
atattattcataaaatgagaatatat-aatcctgatcaagcaactttggaagcctcaagaggatctctcttatctcttgtcattggggtccctaatgaag |
114 |
Q |
| |
|
|||||||| | ||| ||||||||| | ||||||||||||||||| ||| | |||| | |||| || ||||||||| ||||||||||| ||||||||| |
|
|
| T |
29440745 |
atattattgaaaaagtgagaatattttaatcctgatcaagcaaccttgaatgccttacgagggactaatttatctcttatcattggggtctctaatgaag |
29440646 |
T |
|
| Q |
115 |
acattcaatc |
124 |
Q |
| |
|
|||||||||| |
|
|
| T |
29440645 |
acattcaatc |
29440636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 16 - 124
Target Start/End: Complemental strand, 29444392 - 29444283
Alignment:
| Q |
16 |
atattattcataaaatgagaatatat-aatcctgatcaagcaactttggaagcctcaagaggatctctcttatctcttgtcattggggtccctaatgaag |
114 |
Q |
| |
|
|||||||| | ||| ||||||||| | ||||||||||||||||| ||| | |||| | |||| || ||||||||| ||||||||||| ||||||||| |
|
|
| T |
29444392 |
atattattgaaaaagtgagaatattttaatcctgatcaagcaaccttgaatgccttacgagggactaatttatctcttatcattggggtctctaatgaag |
29444293 |
T |
|
| Q |
115 |
acattcaatc |
124 |
Q |
| |
|
|||||||||| |
|
|
| T |
29444292 |
acattcaatc |
29444283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 156
Target Start/End: Original strand, 13431577 - 13431643
Alignment:
| Q |
90 |
cttgtcattggggtccctaatgaagacattcaatcaatagccaacgatatttcatcagcaaataatt |
156 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||| ||||| |||||||||||||| ||||| |
|
|
| T |
13431577 |
cttgtcattggagtccctaatgaagacatcaaatcaattgccaatagtatttcatcagcaactaatt |
13431643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 90 - 156
Target Start/End: Complemental strand, 13303393 - 13303327
Alignment:
| Q |
90 |
cttgtcattggggtccctaatgaagacattcaatcaatagccaacgatatttcatcagcaaataatt |
156 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||| ||||| | |||||||||||| ||||| |
|
|
| T |
13303393 |
cttgtcattggagtccctaatgaagacatcaaatcaattgccaatagtttttcatcagcaactaatt |
13303327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 104; Significance: 2e-51; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 29 - 467
Target Start/End: Complemental strand, 21287462 - 21287024
Alignment:
| Q |
29 |
aatgagaatatataatcctgatcaagcaactttggaagcctcaagaggatctctcttatctcttgtcattggggtccctaatgaagacattcaatcaata |
128 |
Q |
| |
|
||||||||| ||| |||||||||||||||| || ||||| |||||| ||| | || ||||||||||| || ||||||||| ||||| ||||||| |
|
|
| T |
21287462 |
aatgagaatttatgatcctgatcaagcaacattagaagctctaagaggttctaacatagaacttgtcattggagttcctaatgaaaacattgaatcaatt |
21287363 |
T |
|
| Q |
129 |
gccaacgatatttcatcagcaaataattgggtccaaaacaatatactaaaatacactccagg-tgttaattttaggtacattgttgttgggaatgaaata |
227 |
Q |
| |
|
|| || | |||||||||| | | |||||||||||||||||||| |||| ||| | | ||| ||| || ||||| |||||||||||||||||||||||| |
|
|
| T |
21287362 |
gctaatagtgtttcatcagctacttattgggtccaaaacaatatattaaattactc-caaggatgtcaaatttagatacattgttgttgggaatgaaata |
21287264 |
T |
|
| Q |
228 |
aatcccagtaatgacccaacatcacaatttgttcttcgtgcaatgcagaacatttattcagcacttgcatctgccaacttgcaaaatcaaattaagattt |
327 |
Q |
| |
|
|||| |||||||| ||||||||| ||||||||| | |||||| ||||||| || ||||||| |||||||||| || || ||||||| ||| ||| |
|
|
| T |
21287263 |
gatcctagtaatgatccaacatcaacatttgttctaccagcaatgttgaacattaatgcagcactcacatctgccaatttacagcatcaaatcaaggttt |
21287164 |
T |
|
| Q |
328 |
caacagctataaatatgggtttgttgggaagctcgtatcctccatcagcaggagcatttagtgcttccgcaattccatatataacttcaatagttggttt |
427 |
Q |
| |
|
|||| |||||| | ||| |||||||||||| || |||||||||||| |||| |||||||| |||| | ||| |||||||||| |||| ||| ||| |
|
|
| T |
21287163 |
caactgctatacaaatgaatttgttgggaagttcctatcctccatcatcaggtgcatttagcacttcttccattttatatataactccaattgttaattt |
21287064 |
T |
|
| Q |
428 |
tcttgtgaacaccagggcaccacttcttgcaaatgtgtat |
467 |
Q |
| |
|
||||||| | | ||||||||||||||||||||||||| |
|
|
| T |
21287063 |
tcttgtggagaatgaggcaccacttcttgcaaatgtgtat |
21287024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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