View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18850_low_7 (Length: 329)
Name: NF18850_low_7
Description: NF18850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18850_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 83 - 324
Target Start/End: Complemental strand, 38413244 - 38413003
Alignment:
| Q |
83 |
cccacaacgcgcaaaatcgatttaaataatcaaagagaaaaacggaatgtcaatggttgagaagaaaagatcgttgttgaagaggctgaagaaggaaaca |
182 |
Q |
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| T |
38413244 |
cccacaacgcgcaaaatcgatttaaataatcaaagagaaaaacggaatgtcaatggttgagaagaaaagatcgttgttgaagaggctgaagaaggaaaca |
38413145 |
T |
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| Q |
183 |
ttgaggttgaagtttttgtggcaatcttcatcaggattcaggtggaacagacttactttgcctgtttcattcatggaagatattgtttttaaggttgtct |
282 |
Q |
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| T |
38413144 |
ttgaggttgaagtttttgtggcaatcttcatcaggattcaggtggaacagacttacttcgccggtttcattcatggaagatattgtttttaaggttgtct |
38413045 |
T |
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| Q |
283 |
ctgcctttgaggctgttgttcttgttctcaccctatgcttct |
324 |
Q |
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| T |
38413044 |
ctgcctttgaggctgttgttcttgttctcaccctctgcttct |
38413003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 109 - 324
Target Start/End: Complemental strand, 38423102 - 38422890
Alignment:
| Q |
109 |
taatcaaagagaaaaacggaatgtcaatggttgagaagaaaagatcgttgttgaagaggctgaagaaggaaacattgaggttgaagtttttgtggcaatc |
208 |
Q |
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| T |
38423102 |
taatcaaaggaaaaaacgtaatgtcaattgttgggaagaaaagatcgttgttgaagagactgaagaaggaagcattgaggttgaagtttttgtggaaatc |
38423003 |
T |
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| Q |
209 |
ttcatcaggattcaggtggaacagacttactttgcctgtttcattcatggaagatattgtttttaaggttgtctctgcctttgaggctgttgttcttgtt |
308 |
Q |
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| T |
38423002 |
atcatca---ttcaagtggaacacacttactttgcctgtttcattcatggaagatgttgtttttaaggttgtctctgcctttgaggctgttgttcttgtt |
38422906 |
T |
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| Q |
309 |
ctcaccctatgcttct |
324 |
Q |
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| T |
38422905 |
ctcaccctctgcttct |
38422890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 38413287 - 38413242
Alignment:
| Q |
19 |
agtaacggggaagcttccttttctcctcaatacaatataaagtccc |
64 |
Q |
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| T |
38413287 |
agtaacggggaagcttccttttctcctcaatacaatataaagtccc |
38413242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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