View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18851_high_1 (Length: 403)
Name: NF18851_high_1
Description: NF18851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18851_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 17 - 392
Target Start/End: Complemental strand, 45741802 - 45741428
Alignment:
| Q |
17 |
aatattatagatataacgaggtattatagctacccaacnnnnnnnn-gacaaacgaggtatttacaataataaaataattattttgccatgttcctaggg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45741802 |
aatattatagatataacgaggtattatagctacccaacaaaaaaaaagacaaatgaggtatttacaataataaaataattattttgccatgttcctaggg |
45741703 |
T |
|
| Q |
116 |
atcatatatgatattccaagcctaaagaatataattggctgccattcatgggaccattatgggcggcaatagctcaattgaactagattttacacaaata |
215 |
Q |
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|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
45741702 |
atcatatatgatataccaagcctaaagaata--attggctgccattcatgggaccattatgggcggcaatagctcaattgaagtagattttacacaaata |
45741605 |
T |
|
| Q |
216 |
gggtgacctattaggtagtaattatgaacatatagaacttgatagtagtaatttgccactgtttgggatgctactactttaaggaaagaaattgaagagc |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45741604 |
gggtgacctattaggtagtaattatgaacatatagaacttgttagtagtaatttgccactgtttgggatgctactactttaaggaaagaaattgaagagc |
45741505 |
T |
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| Q |
316 |
actagtttggtgtgcaataatatgggcattatggttagccaagaaccgtgttgtgttgcaactttcatggggatttt |
392 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45741504 |
actagtttggtgtgcaataatatgggcattatggttagccaagaaccgtgttgtgttgcaactttcatggggatttt |
45741428 |
T |
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