View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18851_low_1 (Length: 1052)
Name: NF18851_low_1
Description: NF18851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18851_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 924; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 924; E-Value: 0
Query Start/End: Original strand, 16 - 1048
Target Start/End: Complemental strand, 48593101 - 48592071
Alignment:
| Q |
16 |
atatacacctcctcttgtgcttttttcagcacccttggattgttaaacagttctgatattgtccattccacggagatggcagtagtgtcggttgctgccg |
115 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48593101 |
atatccacctcctcttgtgcttttttcagcacccttggattgttaaacagttctgatattgcccattccacggagatggcagtagtgtcggttgctgccg |
48593002 |
T |
|
| Q |
116 |
taaagtaatcctgacatttattattttttgaagaaataatttaataacaataatccaacaatgttttataacttactagggtnnnnnnnnnncttttata |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
48593001 |
taaagtaatcctgacatttattattttttgaagaaataatttaataacaataatccaacaatgttttataacttactagggtcaaaaaaaaaatt--ata |
48592904 |
T |
|
| Q |
216 |
attacataaaaagtatgaggagaagttatattcataccaatattaatgatttgatttgatttctggtaaagttgacttcacggtctttctcactgtagac |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||| |||||||||||||||| || ||||||||||||||| |
|
|
| T |
48592903 |
attacataaaaagtatgaggagaagttatatacgtaccaatattaatgatttgatatgatttctagtaaagttgacttcacagtttttctcactgtagac |
48592804 |
T |
|
| Q |
316 |
atctagcaaaatgtcaagaaaatctttcagtctctcttcttcaccattctcaccaccaccatctattagcttggcttcccttcttagttcttcacgatca |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48592803 |
atctagcaaaatgtcaagaaaatctttcagtctctcttcttcaccattctcaccaccaccatctattagcttggcttcccttcttagttcttcacgatca |
48592704 |
T |
|
| Q |
416 |
gaaataatcttatccaacaaagcatcataccttttgtgtatgtccaaggccctctttttaaaaccttgcaagtcaaagttcttgaaaattcctataaaat |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48592703 |
gaaataatcttatccaacaaagcatcataccttttgtgtatgtccaaggccctctttttaaaaccttgcaagtcaaagttcttgaaaattcctataaaat |
48592604 |
T |
|
| Q |
516 |
ctgaaacattaaattcgccaaaaatttgtgttacctcgcgaaccaaagcccttacttgttctgcttggttatctgttcctgaacaatcaatactcaacat |
615 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
48592603 |
ctgaaacattaaattctccaaaaatctgtgttacctcgcgaaccaaagccctaacttgttctgcttggttatctgttcctgagcaatcaatactcaacat |
48592504 |
T |
|
| Q |
616 |
catccgtgatattatgttgttggaaagctttatcaaagcttgtgtgaggttcacactttcttccaccttagacttatttgccaaagtttgaatgaattca |
715 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
48592503 |
catccgtgatattatgttgttggaaagctttatcaaagcttgtgtgaggttcacactttcttctgccttagacttatttgccaaagtttgaatgaattca |
48592404 |
T |
|
| Q |
716 |
tggagttcttgggttcgaatcggtagaaattgtgccatggttcgattacccaagagctcagtggtgctgagctttttaatagatttccaataagtcccat |
815 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
48592403 |
tggagttcttgggttcgaatcggtagaaattgtgccatggttcgattacccaagagctcagtggtgctgagctttttaataaatttccaataagtcccat |
48592304 |
T |
|
| Q |
816 |
aaggagcgaaagcaaaagttgcatcatcataggcaactacgttgatggctatgctcattttacggtgagaataagtgagctcatgtgtcttgagaaactc |
915 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48592303 |
aaggagcgaaagcaaaagttgcatcatcataggcaactacgttgatggctatgctcattttacggtgagaataagtgagctcatgtgtcttgagaaactc |
48592204 |
T |
|
| Q |
916 |
tttggcgagtgatggagtgttaacaatgataaattgagaggagccaagtcgaagggatattaaagggccatattgatcggagaggtggcgaaaggcctga |
1015 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48592203 |
tttggcgagtgatggagtgttaacaatgataaattgagaggagccaagtcgaagggatattaaagggccatattgatcggagaggtggcgaaaggcctga |
48592104 |
T |
|
| Q |
1016 |
tgaatgagtggtttgaggagatgatgatgtcca |
1048 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |
|
|
| T |
48592103 |
tgaatgagtggtttgaggagatgaagatgtcca |
48592071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 759; E-Value: 0
Query Start/End: Original strand, 250 - 1048
Target Start/End: Complemental strand, 48602564 - 48601766
Alignment:
| Q |
250 |
taccaatattaatgatttgatttgatttctggtaaagttgacttcacggtctttctcactgtagacatctagcaaaatgtcaagaaaatctttcagtctc |
349 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48602564 |
taccaatattaatgatttgatatgatttctagtaaagttgacttcacggtctttctcactgtagacatctagcaaaatgtcaagaaaatctttcagtctc |
48602465 |
T |
|
| Q |
350 |
tcttcttcaccattctcaccaccaccatctattagcttggcttcccttcttagttcttcacgatcagaaataatcttatccaacaaagcatcataccttt |
449 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48602464 |
tcttcttcaccattctcaccaccaccatctattagcttggcttcccttcttagttcttcacgatcagaaataatcttatccaacaaagcatcataccttt |
48602365 |
T |
|
| Q |
450 |
tgtgtatgtccaaggccctctttttaaaaccttgcaagtcaaagttcttgaaaattcctataaaatctgaaacattaaattcgccaaaaatttgtgttac |
549 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
48602364 |
tgtgtatgtccaaggccctctttttaaaaccttgcaagtcaaagttcttgaaaattcctataaaatctgaaacattaaattctccaaaaatctgtgttac |
48602265 |
T |
|
| Q |
550 |
ctcgcgaaccaaagcccttacttgttctgcttggttatctgttcctgaacaatcaatactcaacatcatccgtgatattatgttgttggaaagctttatc |
649 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48602264 |
ctcgcgaaccaaagccctaacttgttctgcttggttatctgttcctgagcaatcaatactcaacatcatccgtgatattatgttgttggaaagctttatc |
48602165 |
T |
|
| Q |
650 |
aaagcttgtgtgaggttcacactttcttccaccttagacttatttgccaaagtttgaatgaattcatggagttcttgggttcgaatcggtagaaattgtg |
749 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48602164 |
aaagcttgtgtgaggttcacactttcttctgccttagacttatttgccaaagtttgaatgaattcatggagttcttgggttcgaatcggtagaaattgtg |
48602065 |
T |
|
| Q |
750 |
ccatggttcgattacccaagagctcagtggtgctgagctttttaatagatttccaataagtcccataaggagcgaaagcaaaagttgcatcatcataggc |
849 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48602064 |
ccatggttcgattacccaagagctcagtggtgctgagctttttaataaatttccaataagtcccataaggagcgaaagcaaaagttgcatcatcataggc |
48601965 |
T |
|
| Q |
850 |
aactacgttgatggctatgctcattttacggtgagaataagtgagctcatgtgtcttgagaaactctttggcgagtgatggagtgttaacaatgataaat |
949 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48601964 |
aactacgttgatggctatgctcattttacggtgagaataagtgagctcatgtgtcttgagaaactctttggcgagtgatggagtgttaacaatgataaat |
48601865 |
T |
|
| Q |
950 |
tgagaggagccaagtcgaagggatattaaagggccatattgatcggagaggtggcgaaaggcctgatgaatgagtggtttgaggagatgatgatgtcca |
1048 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
48601864 |
tgagaggagccaagtcgaagggatattaaagggccatattgatcggagaggtggcgaaaggcctgatgaatgagtggtttgaggagatgaagatgtcca |
48601766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 174; E-Value: 4e-93
Query Start/End: Original strand, 16 - 197
Target Start/End: Complemental strand, 48597712 - 48597531
Alignment:
| Q |
16 |
atatacacctcctcttgtgcttttttcagcacccttggattgttaaacagttctgatattgtccattccacggagatggcagtagtgtcggttgctgccg |
115 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48597712 |
atatccacctcctcttgtgcttttttcagcacccttggattgttaaacagttctgatattgcccattccacggagatggcagtagtgtcggttgctgccg |
48597613 |
T |
|
| Q |
116 |
taaagtaatcctgacatttattattttttgaagaaataatttaataacaataatccaacaatgttttataacttactagggt |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48597612 |
taaagtaatcctgacatttattattttttgaagaaataatttaataacaataatccaacaatgttttataacttactagggt |
48597531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 242
Target Start/End: Complemental strand, 48597519 - 48597488
Alignment:
| Q |
211 |
ttataattacataaaaagtatgaggagaagtt |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
48597519 |
ttataattacataaaaagtatgaggagaagtt |
48597488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 587; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 587; E-Value: 0
Query Start/End: Original strand, 250 - 1048
Target Start/End: Original strand, 23231463 - 23232261
Alignment:
| Q |
250 |
taccaatattaatgatttgatttgatttctggtaaagttgacttcacggtctttctcactgtagacatctagcaaaatgtcaagaaaatctttcagtctc |
349 |
Q |
| |
|
|||||| || ||||||||||| ||| |||| ||||| ||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
23231463 |
taccaagatcaatgatttgatatgacttctagtaaaattgacttcaaggtctttctcctcaaagacattaagcaaaatgtcaagaaaatctttcagtctc |
23231562 |
T |
|
| Q |
350 |
tcttcttcaccattctcaccaccaccatctattagcttggcttcccttcttagttcttcacgatcagaaataatcttatccaacaaagcatcataccttt |
449 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
23231563 |
tcttcttcaccattctcaccaccaccatctattagcttggcttcccttcttagttcttcacgatcagaaataatcttatccaacaaagcatcatacctct |
23231662 |
T |
|
| Q |
450 |
tgtgtatgtccaaggccctctttttaaaaccttgcaagtcaaagttcttgaaaattcctataaaatctgaaacattaaattcgccaaaaatttgtgttac |
549 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
23231663 |
tgtgtatgtccaaggccctttttttaaaaccttgcaagtcaaagttcttgaaaaatcctataaaatccgaaacattaaattctccaaaaatttgtgttac |
23231762 |
T |
|
| Q |
550 |
ctcgcgaaccaaagcccttacttgttctgcttggttatctgttcctgaacaatcaatactcaacatcatccgtgatattatgttgttggaaagctttatc |
649 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23231763 |
ctcgcgaaccaaagccctaacttgttctgcttggttatctgttcctgagcaatcaatactcaacatcatccgtgatattatgttgttggaaagctttatc |
23231862 |
T |
|
| Q |
650 |
aaagcttgtgtgaggttcacactttcttccaccttagacttatttgccaaagtttgaatgaattcatggagttcttgggttcgaatcggtagaaattgtg |
749 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||| ||||||| ||| |||||||||||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
23231863 |
aaagcttgtgtgaggttcaaactttctctggccttagatttatttgtcaatgtttgaatgaattcatcgagttcttgggttcgaatcggtaggaattgcc |
23231962 |
T |
|
| Q |
750 |
ccatggttcgattacccaagagctcagtggtgctgagctttttaatagatttccaataagtcccataaggagcgaaagcaaaagttgcatcatcataggc |
849 |
Q |
| |
|
| |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23231963 |
caatggttcggttacccaagagctcagtggtgctgagctttttaataaatttccaataagtcccataaggagcgaaagcaaaagttgcatcatcataggc |
23232062 |
T |
|
| Q |
850 |
aactacgttgatggctatgctcattttacggtgagaataagtgagctcatgtgtcttgagaaactctttggcgagtgatggagtgttaacaatgataaat |
949 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
23232063 |
aactacgttgatggctatgctcattttacggtgagaataagtgagctcatgtgtcttgagaaactctttggcgagtgatggagtgttaacaactataaat |
23232162 |
T |
|
| Q |
950 |
tgagaggagccaagtcgaagggatattaaagggccatattgatcggagaggtggcgaaaggcctgatgaatgagtggtttgaggagatgatgatgtcca |
1048 |
Q |
| |
|
||| |||||||||||||||||||| | ||| |||||| | || ||||||| ||| ||||| |||||||| |||||||| ||||||||| |||||||| |
|
|
| T |
23232163 |
cgagcagagccaagtcgaagggatataagaggtccatatcgctcagagaggtcgcggaaggcatgatgaataagtggtttaaggagatgaagatgtcca |
23232261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 200; E-Value: 1e-108
Query Start/End: Original strand, 385 - 1044
Target Start/End: Original strand, 23224265 - 23224924
Alignment:
| Q |
385 |
cttggcttcccttcttagttcttcacgatcagaaataatcttatccaacaaagcatcataccttttgtgtatgtccaaggccctctttttaaaaccttgc |
484 |
Q |
| |
|
|||||||| ||||| | ||| ||||||||| |||| | ||| |||| |||||||||||||| || ||||| ||||| ||||||||||| | |||||| |
|
|
| T |
23224265 |
cttggctttccttcgtgattcctcacgatcacaaattaacttctccagaaaagcatcatacctcttatgtatatccaatgccctctttttgagaccttga |
23224364 |
T |
|
| Q |
485 |
aagtcaaagttcttgaaaattcctataaaatctgaaacattaaattcgccaaaaatttgtgttacctcgcgaaccaaagcccttacttgttctgcttggt |
584 |
Q |
| |
|
||||| ||||||||| ||| |||||||||||| |||| |||||||| || |||||||| || || || |||||||| | ||| | ||||| || || |
|
|
| T |
23224365 |
aagtccaagttcttgcaaaatcctataaaatccgaaatgttaaattccccgaaaatttgggtcacatctcgaaccaacgtcctcgcctgttcagcctgac |
23224464 |
T |
|
| Q |
585 |
tatctgttcctgaacaatcaatactcaacatcatccgtgatattatgttgttggaaagctttatcaaagcttgtgtgaggttcacactttcttccacctt |
684 |
Q |
| |
|
|||| |||||||| | ||||| |||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||| |||||||| ||||| |
|
|
| T |
23224465 |
tatccgttcctgagctctcaatgctcaacatcatccgtgatattatgttgttggaaagcttcaacaaagcttgagtgaggttcacgctttcttcaacctt |
23224564 |
T |
|
| Q |
685 |
agacttatttgccaaagtttgaatgaattcatggagttcttgggttcgaatcggtagaaattgtgccatggttcgattacccaagagctcagtggtgctg |
784 |
Q |
| |
|
|| |||||| |||||||||||||||| || | ||||||| | |||||||| |||| |||||| | || || || || || ||||||||| ||| || |
|
|
| T |
23224565 |
ggatttattttccaaagtttgaatgaactcgttgagttctcgagttcgaattggtaagaattgtccaatagtccggttgcctaagagctcaaaggtacta |
23224664 |
T |
|
| Q |
785 |
agctttttaatagatttccaataagtcccataaggagcgaaagcaaaagttgcatcatcataggcaactacgttgatggctatgctcattttacggtgag |
884 |
Q |
| |
|
|||||||| || |||||||||| | ||||||||| || ||||||||||| |||||||| ||| ||||| ||||||||| ||| ||||||||||| || |
|
|
| T |
23224665 |
agctttttgatgaatttccaatatgccccataaggggcaaaagcaaaagtagcatcatcgtagacaactgtgttgatggcaatgttcattttacgggaag |
23224764 |
T |
|
| Q |
885 |
aataagtgagctcatgtgtcttgagaaactctttggcgagtgatggagtgttaacaatgataaattgagaggagccaagtcgaagggatattaaagggcc |
984 |
Q |
| |
|
||||| ||||| | ||| |||||||||||||| ||||||||||| | |||||| ||||||| || || ||||||||||||||||| | || || |
|
|
| T |
23224765 |
aataaacaagctcgtttgttttgagaaactcttttgcgagtgatggggaactaacaacgataaatggaacagaaccaagtcgaagggatataaggggtcc |
23224864 |
T |
|
| Q |
985 |
atattgatcggagaggtggcgaaaggcctgatgaatgagtggtttgaggagatgatgatg |
1044 |
Q |
| |
|
|||| |||| ||||||| ||||||||| ||||||| ||| ||||||||||||||| |||| |
|
|
| T |
23224865 |
atatcgatcagagaggtcgcgaaaggcttgatgaacgaggggtttgaggagatgaagatg |
23224924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 22 - 129
Target Start/End: Original strand, 23231163 - 23231270
Alignment:
| Q |
22 |
acctcctcttgtgcttttttcagcacccttggattgttaaacagttctgatattgtccattccacggagatggcagtagtgtcggttgctgccgtaaagt |
121 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||| ||||| || |||| |
|
|
| T |
23231163 |
acctcctcttgagcttttttcaacacccttggattgttaaacagttctgatattgcccattcgactgagatggcagtagtgtcggtagctgctgtgaagt |
23231262 |
T |
|
| Q |
122 |
aatcctga |
129 |
Q |
| |
|
|||||||| |
|
|
| T |
23231263 |
aatcctga |
23231270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 21 - 129
Target Start/End: Original strand, 23223417 - 23223525
Alignment:
| Q |
21 |
cacctcctcttgtgcttttttcagcacccttggattgttaaacagttctgatattgtccattccacggagatggcagtagtgtcggttgctgccgtaaag |
120 |
Q |
| |
|
|||||| ||||||||||| ||||| || |||||||||| |||||||||| |||||||||||||| || |||||||| || || || ||||| || ||| |
|
|
| T |
23223417 |
cacctcttcttgtgctttcttcagtactattggattgttgaacagttctgctattgtccattccaatgaaatggcagttgtatctgtagctgctgtgaag |
23223516 |
T |
|
| Q |
121 |
taatcctga |
129 |
Q |
| |
|
||||||||| |
|
|
| T |
23223517 |
taatcctga |
23223525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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