View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18851_low_3 (Length: 325)
Name: NF18851_low_3
Description: NF18851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18851_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 12 - 308
Target Start/End: Original strand, 38608848 - 38609153
Alignment:
| Q |
12 |
tcatcacatgcaacctaactagaacatacagtgttcggtttaaacaagtcaccctcaatatatgcaacctaagaaacgatatgagaataaataactacta |
111 |
Q |
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| T |
38608848 |
tcatcacatgcaacctaactagaacatacattgttcggtttaaacaagtcaccctcaatatatgcaacctaagaaacgatatgagaataaataactacta |
38608947 |
T |
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| Q |
112 |
ggnnnnnnngaacaacgtagcatatccatagagagctaatcaa--------caagacccttatttgccaatgcataccaaaatgtcaccaaaacacgagt |
203 |
Q |
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| T |
38608948 |
ggaaaaaaagaacaacgtagcatatccatacagagctaatcaaataatcaacaaaacccttatttgccaatacataccaaaatgtcaccaaagcacgagt |
38609047 |
T |
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| Q |
204 |
atcatttgcaaa-agtataacaaaccatattgtgacagtactttgaacgatacctgaacctacgaataatatatgacacacaaacaaagagcaatgtgcc |
302 |
Q |
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| T |
38609048 |
atcattggcaatcagtatcacaaaccatattgtgacagtactttgaacgatacctgaacctacaaataatatatgacacacaaacaaagagcaatgtgac |
38609147 |
T |
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| Q |
303 |
tcatat |
308 |
Q |
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|||||| |
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| T |
38609148 |
tcatat |
38609153 |
T |
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