View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18852_high_11 (Length: 412)
Name: NF18852_high_11
Description: NF18852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18852_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 16 - 402
Target Start/End: Complemental strand, 8355037 - 8354629
Alignment:
| Q |
16 |
ataagaaagggaccaaaaccgatagtttttaaaatgaatgaccaagtactccattattaaaggagcaatccgagtaat--tcaaggataggatag----- |
108 |
Q |
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| T |
8355037 |
ataagaaagggaccaaaaccgatagtttttaaaatgaatgaccaagtactccattattaaaggaccaatccgagtaatattcaaggataggataggatag |
8354938 |
T |
|
| Q |
109 |
ataagtaatcttattaaaatagatagactagggtgtatttttgaactgagtctcttacaacaacaaaaacaaaacagttatccatgatatatctat---- |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
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| T |
8354937 |
ataagtaatcttattaaaatagatagactagggtgtatttttgaactgagtct--tacaacaacaaaaacaaaacagttatccatgatatatatatatat |
8354840 |
T |
|
| Q |
205 |
--------cattcccaaagcaaaaggttttaggtt-----gcaggggaagcattagcaatgtcaatgacaaaacggtaacgaacatcattcttcacaaga |
291 |
Q |
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| T |
8354839 |
atatatatcattcccaaagcaaagggttttaggttaggttgcaggggaagcattagcaatgtcaatgacaaaacggtaacgaacatcattcttcaaaaga |
8354740 |
T |
|
| Q |
292 |
cgctgaaaagcttcattgattgtatcagctttgattaattcaatgtcacatgtgatattatgcttcccacaaacatccaacatttcttgagtctctttta |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8354739 |
cgctgaaaagcttcattgattgtatcagctttgattaattcaatgtcacatgtgatattatgcttcccacaaacatccaacatttcttgagtctctttta |
8354640 |
T |
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| Q |
392 |
ttcctcctatg |
402 |
Q |
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||||||||||| |
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| T |
8354639 |
ttcctcctatg |
8354629 |
T |
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