View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18852_high_30 (Length: 258)
Name: NF18852_high_30
Description: NF18852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18852_high_30 |
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Alignment Details
Target: chr5 (Bit Score: 72; Significance: 8e-33; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 124 - 227
Target Start/End: Complemental strand, 19939394 - 19939291
Alignment:
| Q |
124 |
agaaaataatggcaattcatagtgatttcgcaatatatgtaagcatgcgcgcaaaaggacatatagtgaccttgcattgttagcaaggatgcacgaagat |
223 |
Q |
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| T |
19939394 |
agaaaataatggcaattcataatgatttcgcaatactggcaagtatgcacgcaaaaggacatatagtgaccttgcattgttagcatggatgcacgaagat |
19939295 |
T |
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| Q |
224 |
ttat |
227 |
Q |
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|||| |
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| T |
19939294 |
ttat |
19939291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 123 - 192
Target Start/End: Complemental strand, 19374159 - 19374090
Alignment:
| Q |
123 |
cagaaaataatggcaattcatagtgatttcgcaatatatgtaagcatgcgcgcaaaaggacatatagtga |
192 |
Q |
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| T |
19374159 |
cagaaaataatggcaattcatagtgatttcgcaatattggcaagtatgcacgcaaaaggacatatagtga |
19374090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 10 - 102
Target Start/End: Complemental strand, 19374632 - 19374535
Alignment:
| Q |
10 |
atatgaaagtagtgaatatgaaagaaactcaatgccaagc-----agcactgcaaaagaatagggaattccagaagaatgtttttaaaagaacgtaaa |
102 |
Q |
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| T |
19374632 |
atatgaaagtagtagatatgaaagaaactcaatatcaagccatacagcacatcaaaagaatagggaaatccagaagaatgtttttcaaagaacgtaaa |
19374535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 19916388 - 19916305
Alignment:
| Q |
18 |
gtagtgaatatgaaagaaactcaatgccaag-----cagcactgcaaaagaatagggaattccagaagaatgtttttaaaagaa |
96 |
Q |
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| T |
19916388 |
gtagtggatatgaaaggaactcaatgccaattcatacagcacagcaaaacaatagggaattccagaagaatgtttttaaaagaa |
19916305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 19939635 - 19939586
Alignment:
| Q |
49 |
cagcactgcaaaagaatagggaattccagaagaatgtttttaaaagaacg |
98 |
Q |
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|||||| ||||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
19939635 |
cagcacagcaaaagaatagggagttccagaagaaagtttttaaaagaacg |
19939586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 227
Target Start/End: Complemental strand, 19915781 - 19915694
Alignment:
| Q |
142 |
atagtgatttcgcaatatatgtaagcatgcgcgcaaaaggaca--tatagtgaccttgcattgttagcaaggatgcacgaagatttat |
227 |
Q |
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| T |
19915781 |
atagtgatttcgcaatattggtaagtatgcaagcaaaaggacatatatagtgatcttgcattattagtaagaatgtgcgaagatttat |
19915694 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 126 - 227
Target Start/End: Original strand, 32837729 - 32837830
Alignment:
| Q |
126 |
aaaataatggcaattcatagtgatttcgcaatatatgtaagcatgcgcgcaaaaggacatatagtgaccttgcattgttagcaaggatgcacgaagattt |
225 |
Q |
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|
||||||||||||||||||||||||||| |||||| ||||| |||| | ||||||||||||||||| || ||||| |||| ||||| || || |||||| |
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| T |
32837729 |
aaaataatggcaattcatagtgatttctcaatattggtaagtatgcatggaaaaggacatatagtgatctggcattattagtaaggacgcgcggagattt |
32837828 |
T |
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| Q |
226 |
at |
227 |
Q |
| |
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|| |
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| T |
32837829 |
at |
32837830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 142 - 223
Target Start/End: Original strand, 32843269 - 32843350
Alignment:
| Q |
142 |
atagtgatttcgcaatatatgtaagcatgcgcgcaaaaggacatatagtgaccttgcattgttagcaaggatgcacgaagat |
223 |
Q |
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|||||||||||||||||| ||||| |||| ||||||||||||||||||| |||||||| |||| |||||||| ||||||| |
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| T |
32843269 |
atagtgatttcgcaatattggtaagtatgcatgcaaaaggacatatagtgatcttgcattattagtaaggatgcgcgaagat |
32843350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 102
Target Start/End: Original strand, 32837110 - 32837204
Alignment:
| Q |
10 |
atatgaaagtagtgaatatgaaagaaactcaatgccaag--cagcactgcaaaagaatagggaattccagaagaatgtttttaaaagaacgtaaa |
102 |
Q |
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||||| ||| |||| ||||||||||||||||||| ||| |||||| || ||||| | |||||||||||| ||||||||||||||||| ||||| |
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| T |
32837110 |
atatggaagcagtggatatgaaagaaactcaatggcaaatacagcacagcgaaagagtggggaattccagaggaatgtttttaaaagaatgtaaa |
32837204 |
T |
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