View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18852_high_31 (Length: 248)
Name: NF18852_high_31
Description: NF18852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18852_high_31 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 19974620 - 19974392
Alignment:
| Q |
19 |
gatccagtattgaattctgctgtattaactttgttcaacttgtcacaggcacaaccttaaattactttttggatgacaaaatcaataaagccgagattct |
118 |
Q |
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| T |
19974620 |
gatccagtattgaattctgctgtattaactttgttcaacttgtcacaggcacaaccttaaattactttttggacgacaaaatcaataaagccgagattct |
19974521 |
T |
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| Q |
119 |
tttcccaggagttggttgttttttggttgcggtttgtctaggttctgctgttcatgcatctaatactgccgataatcaagctaagctcaaggatttttca |
218 |
Q |
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| T |
19974520 |
tttccctggagtgggttgctttttggttgcggtttgtctaggctcggctgttcatgcatctaatactgccgataatcaggctaagctcaaggatttttca |
19974421 |
T |
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| Q |
219 |
agtcatcataatgatgcaaccttgtatgt |
247 |
Q |
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| T |
19974420 |
agtcatcataatgatgtaaccttgtatgt |
19974392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 26 - 205
Target Start/End: Original strand, 19622008 - 19622187
Alignment:
| Q |
26 |
tattgaattctgctgtattaactttgttcaacttgtcacaggcacaaccttaaattactttttggatgacaaaatcaataaagccgagattcttttccca |
125 |
Q |
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| T |
19622008 |
tattgaattctactgaattaactttgttgaatttgtcacaggcacaacattgaattattttttggatgacaaaatcaataaagctgagattctttttcca |
19622107 |
T |
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| Q |
126 |
ggagttggttgttttttggttgcggtttgtctaggttctgctgttcatgcatctaatactgccgataatcaagctaagct |
205 |
Q |
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| T |
19622108 |
ggagttggttgctttttagttgcagtttgtttaggctctgctgttcattcatctaatactgctgataatcaggctaagct |
19622187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 78 - 215
Target Start/End: Original strand, 19978391 - 19978528
Alignment:
| Q |
78 |
aattactttttggatgacaaaatcaataaagccgagattcttttcccaggagttggttgttttttggttgcggtttgtctaggttctgctgttcatgcat |
177 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||| ||||| ||||| || || | | | ||||| | | |
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| T |
19978391 |
aattactttttggatgacaaaatcaataaagctgagattctttttccaggagttggttgcttttttgttgcagtttgccttggctattttcttcattctt |
19978490 |
T |
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| Q |
178 |
ctaatactgccgataatcaagctaagctcaaggatttt |
215 |
Q |
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| |||| ||| |||||||| |||||||||||||||||| |
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| T |
19978491 |
caaatattgctgataatcaggctaagctcaaggatttt |
19978528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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