View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18852_high_32 (Length: 246)
Name: NF18852_high_32
Description: NF18852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18852_high_32 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 32832407 - 32832636
Alignment:
| Q |
1 |
ctgagctacgtctttattgagtgtcaccccaagttttccatctgaatcttcttcccttctacaagaaaaataagccttgtcatcaaaggctctttgtgtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32832407 |
ctgagctacgtctttattgagtgtcaccccaagttttccatctgaatcttcttcccttctacaagaaaaataagccttgtcatcaaaggctctttgtgtt |
32832506 |
T |
|
| Q |
101 |
ctaagcgacctaactaacttgtattttgcacttttccttgcttcttttttgtttgagagaagaattgctgcacttcccattctaaaggtacagttaagat |
200 |
Q |
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||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32832507 |
ctaagcgacctaactaacttgtattttgcggttttacttgcttcttttttgtttgagagaagaattgctgcacttcccattctaaaggtacagttaagat |
32832606 |
T |
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| Q |
201 |
gcaactttgatctttctttaccgggatacc |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
32832607 |
gcaactttgatctttctttaccgggatacc |
32832636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 32845688 - 32845917
Alignment:
| Q |
1 |
ctgagctacgtctttattgagtgtcaccccaagttttccatctgaatcttcttcccttctacaagaaaaataagccttgtcatcaaaggctctttgtgtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32845688 |
ctgagctacgtctttattgagtgtcaccccaagttttccatctgaatcttcttcccttctacaagaaaaataagccttgtcatcaaaggctctttgtgtt |
32845787 |
T |
|
| Q |
101 |
ctaagcgacctaactaacttgtattttgcacttttccttgcttcttttttgtttgagagaagaattgctgcacttcccattctaaaggtacagttaagat |
200 |
Q |
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||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32845788 |
ctaagcgacctaactaacttgtattttgcggttttacttgcttcttttttgtttgagagaagaattgctgcacttcccattctaaaggtacagttaagat |
32845887 |
T |
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| Q |
201 |
gcaactttgatctttctttaccgggatacc |
230 |
Q |
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|
|||||||||||||||||||||||||||||| |
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| T |
32845888 |
gcaactttgatctttctttaccgggatacc |
32845917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 17932236 - 17932007
Alignment:
| Q |
1 |
ctgagctacgtctttattgagtgtcaccccaagttttccatctgaatcttcttcccttctacaagaaaaataagccttgtcatcaaaggctctttgtgtt |
100 |
Q |
| |
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|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
17932236 |
ctgaactacgtctttattgagtgtcaccccaagtattccatctgaatcttcttcccttctacaagcaaaataagccttgtcatcaaaggctctttgtgtt |
17932137 |
T |
|
| Q |
101 |
ctaagcgacctaactaacttgtattttgcacttttccttgcttcttttttgtttgagagaagaattgctgcacttcccattctaaaggtacagttaagat |
200 |
Q |
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|
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
17932136 |
ctaagcgacctaactaacttgtattttgcggttttacttgcttcttttttgtttgagagaagaattgctgcactacccattctaaagctacagttaagat |
17932037 |
T |
|
| Q |
201 |
gcaactttgatctttctttaccgggatacc |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
17932036 |
gcaactttgatctttctttaccgggatacc |
17932007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 17 - 230
Target Start/End: Complemental strand, 46188742 - 46188529
Alignment:
| Q |
17 |
ttgagtgtcaccccaagttttccatctgaatcttcttcccttctacaagaaaaataagccttgtcatcaaaggctctttgtgttctaagcgacctaacta |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||| || |||||||| || |||||||| ||||||||||||||||| | ||||| || |
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| T |
46188742 |
ttgagtgtcaccccaagttttccatctgaatcttcttcccttatacaggataaataagctttatcatcaaaagctctttgtgttctaagtgtcctaagta |
46188643 |
T |
|
| Q |
117 |
acttgtattttgcacttttccttgcttcttttttgtttgagagaagaattgctgcacttcccattctaaaggtacagttaagatgcaactttgatctttc |
216 |
Q |
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|| ||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| | ||||||||||| |||| |
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| T |
46188642 |
acaaatattttgcatttttacttgcttcttttttgtttgaaagaagaattgctgcacttcccattctaaagagacagttaataagcaactttgatttttc |
46188543 |
T |
|
| Q |
217 |
tttaccgggatacc |
230 |
Q |
| |
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||||| ||||||| |
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| T |
46188542 |
cttacctggatacc |
46188529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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