View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18852_high_33 (Length: 244)
Name: NF18852_high_33
Description: NF18852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18852_high_33 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 51733159 - 51733382
Alignment:
| Q |
1 |
ttgagaaaatagaataattgaacgttaccagatgtgtcggtgttgtgtcggtgctacaaagctcctagatacggcctattgatgaatcaattcttttttg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
51733159 |
ttgagaaaatagaataattgaacgttaccagatgtgtcggtgttgtgtcggtgctacaaagctcctagatatggcctattgatgaatcaattcttttttg |
51733258 |
T |
|
| Q |
101 |
cagattaacggccgttcaattcaagacatgcagatatttggagatcctttgcgtataccagttgtgcttgttgaaagggtgatgaatgtaccacggcgta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51733259 |
cagattaacggccgttcaattcaagacatgcagatatttggagatcctttgcgtataccagttgtgcttgttgaaagggtgatgaatgtaccacggcgta |
51733358 |
T |
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| Q |
201 |
gtaccagtgaaattccactcctag |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
51733359 |
gtaccagtgaaattccactcctag |
51733382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 95 - 198
Target Start/End: Original strand, 356081 - 356184
Alignment:
| Q |
95 |
tttttgcagattaacggccgttcaattcaagacatgcagatatttggagatcctttgcgtataccagttgtgcttgttgaaagggtgatgaatgtaccac |
194 |
Q |
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||||||||||||||| || ||||||||||||||||| || |||||||||||||| ||||||||| ||||| |||||||| | |||| ||||| ||||| |
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| T |
356081 |
tttttgcagattaacaaccaatcaattcaagacatgcaaatgtttggagatcctttacgtataccaattgtgattgttgaacgtgtgacgaatgcaccac |
356180 |
T |
|
| Q |
195 |
ggcg |
198 |
Q |
| |
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|||| |
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| T |
356181 |
ggcg |
356184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 28452602 - 28452649
Alignment:
| Q |
4 |
agaaaatagaataattgaacgttaccagatgtgtcggtgttgtgtcgg |
51 |
Q |
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|||||||| |||||||||| ||||||| |||||| ||||||||||||| |
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| T |
28452602 |
agaaaataaaataattgaatgttaccacatgtgttggtgttgtgtcgg |
28452649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 19625975 - 19625927
Alignment:
| Q |
1 |
ttgagaaaatagaataattgaacgttaccagatgtgtcggtgttgtgtc |
49 |
Q |
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|||||||||| ||||||||||| || |||| ||||||| |||||||||| |
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| T |
19625975 |
ttgagaaaatggaataattgaatgtaaccacatgtgtcagtgttgtgtc |
19625927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 7936908 - 7936964
Alignment:
| Q |
2 |
tgagaaaatagaataattgaacgttaccagatgtgtcggtgttgtgtcggtgctaca |
58 |
Q |
| |
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||||||||||||||||||||| || | || |||||||||||| |||| |||||||| |
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| T |
7936908 |
tgagaaaatagaataattgaatgtcagcacatgtgtcggtgtcatgtcagtgctaca |
7936964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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