View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18852_high_35 (Length: 240)
Name: NF18852_high_35
Description: NF18852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18852_high_35 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 24990441 - 24990232
Alignment:
| Q |
15 |
acctgtgttattgaatttgtctgggttaatatccacacctattatttttgatgcacctcttgctcgtgccccttctgcaacctagcccaagttcaatata |
114 |
Q |
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| T |
24990441 |
acctgtgttattgaatttgtctgggttaatatccacacctattatttttgatgcacctcttgctcgtgccccttctgcaacctagcccaagttcaatata |
24990342 |
T |
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| Q |
115 |
aaatcagggtcttaccaagattcttatgaatttgtttttggttcatatattattaggtattgaataagatcaaaggtgattgtgaaaacaaagacattgt |
214 |
Q |
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| T |
24990341 |
aaatcagggtcttaccaagattcttatgaatttgtttttggttcatatattattaggtattgaataagatcaaaggtgattgtgaaaacaaagacattgt |
24990242 |
T |
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| Q |
215 |
aagttaaaat |
224 |
Q |
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|||||||||| |
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| T |
24990241 |
aagttaaaat |
24990232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 28 - 186
Target Start/End: Complemental strand, 24994113 - 24993959
Alignment:
| Q |
28 |
aatttgtctgggttaatatccacacctattatttttgatgcacctcttgctcgtgccccttctgcaacctagcccaagttcaatataaaatcagggtctt |
127 |
Q |
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||||| |||||||| | ||||||||||||||||||||| |||||||| ||| | |||||| |||||||| ||| |||||||||||||| |||||||||| |
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| T |
24994113 |
aatttctctgggttgacatccacacctattatttttgaagcacctctggcttgcgcccctagtgcaacctggccaaagttcaatataaattcagggtctt |
24994014 |
T |
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| Q |
128 |
accaagattcttatgaatttgtttttggttcatatattattaggtattgaataagatca |
186 |
Q |
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| T |
24994013 |
accaagaattttataaatttg-ttttggttcata---tactaggtattgaagaagatca |
24993959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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