View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18852_high_8 (Length: 455)
Name: NF18852_high_8
Description: NF18852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18852_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 402; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 19 - 436
Target Start/End: Complemental strand, 2274260 - 2273843
Alignment:
| Q |
19 |
cagagacatcgacaaagatcatcagaggtttaagagagttgttgtgatcacgatgaatttattcttggcattgattatgtttgctgcaatgaatatatca |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2274260 |
cagagacatcgacaaagatcatcagaggtttaagagagttgttgtgatcacgatgaatttattcttggcattgattatgtttgctgcaatgaatatatca |
2274161 |
T |
|
| Q |
119 |
tcatattttggtaaattcatggtacaacataacattgctgtgatgctcatagtccttgctgttgtttcgatttttcaaatagcacttaatattggaagta |
218 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2274160 |
tcatattttggtaaatttatggtacaacataacattgctgtgatgctcatagtccttgctgttgtttcgatttttcaaatagcacttaatattggaagta |
2274061 |
T |
|
| Q |
219 |
cactacatcgtgtccctaatcctaaccctaaccctctcaaaaacaacaacgaaaacaccatggtaatcttatacattctggtgctatcaagtgtaatatc |
318 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2274060 |
cactacatcgtgtccctaaccctaaccctaaccctctcaaaaacaacaacgaaaacaccatggtaatcttatacattctggtgctatcaagtgtaatatc |
2273961 |
T |
|
| Q |
319 |
aagcatagaagtgagacttgtttcaaatactgccgcagcgattattaatcttatattatgtcatatcactcttacaaggtttgtcacattcaacaagcaa |
418 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2273960 |
aagcatagaagtgagactcgtttcaaatactgccgcagcgattatcaatcttatattatgtcatatcactcttacaaggtttgtcacattcaacaagcaa |
2273861 |
T |
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| Q |
419 |
gagataccacgtttaatt |
436 |
Q |
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|||||||||||||||||| |
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| T |
2273860 |
gagataccacgtttaatt |
2273843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 20 - 438
Target Start/End: Complemental strand, 2272701 - 2272280
Alignment:
| Q |
20 |
agagacatcgacaaagatcatcagaggtttaagagagttgttgtgatcacgatgaatttattcttggcattgattatgtttgctgcaatgaatatatcat |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272701 |
agagacatcgacaaagatcatcagaggtttaagagagttgttgtgatcacgatgaatttattcttggcattgattatgtttgctgcaatgaatatatcat |
2272602 |
T |
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| Q |
120 |
catattttggtaaattcatggtacaacataacattgctgtgatgctcatagtccttgctgttgtttcgatttttcaaatagcacttaatattggaagtac |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272601 |
catattttggtaaattcatggtacaacataacattgctgtgatgctcatagtccttgctgttgtttcgatttttcaaatagcacttaatattggaagtac |
2272502 |
T |
|
| Q |
220 |
actacatcgtgtccctaatcctaaccctaaccctctcaaaaacaacaac---gaaaacaccatggtaatcttatacattctggtgctatcaagtgtaata |
316 |
Q |
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|||||||||||||||||| |||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2272501 |
actacatcgtgtccctaaccctaaccctaaccctcacaaaaacaacaacaataacaacaccatggtaatcttatacattctgctgctatcaagtgtaata |
2272402 |
T |
|
| Q |
317 |
tcaagcatagaagtgagacttgtttcaaatactgccgcagcgattattaatcttatattatgtcatatcactcttacaaggtttgtcacattcaacaagc |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272401 |
tcaagcatagaagtgagacttgtttcaaatactgccgcagcgattatcaattttatattatgtcatatcactcttacaaggtttgtcacattcaacaagc |
2272302 |
T |
|
| Q |
417 |
aagagataccacgtttaatttg |
438 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
2272301 |
aagagataccacgtttaatttg |
2272280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 42 - 250
Target Start/End: Original strand, 373328 - 373536
Alignment:
| Q |
42 |
agaggtttaagagagttgttgtgatcacgatgaatttattcttggcattgattatgtttgctgcaatgaatatatcatcatattttggtaaattcatggt |
141 |
Q |
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|||||||||||| | | ||||||| || |||| ||||| ||||| |||||||||| | | |||||||||||| |||||||||||||| |||||||||| |
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| T |
373328 |
agaggtttaagaaaatagttgtgactacaatgagtttatccttggtattgattatgatcggtgcaatgaatatgtcatcatattttgggaaattcatggc |
373427 |
T |
|
| Q |
142 |
acaacataacattgctgtgatgctcatagtccttgctgttgtttcgatttttcaaatagcacttaatattggaagtacactacatcgtgtccctaatcct |
241 |
Q |
| |
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||||| ||| |||||||||||||||| || |||||||||||| | ||||||||||||||| | ||| || ||||||||||||||||| || ||| |
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| T |
373428 |
ggaacatgacactgctgtgatgctcatactcattgctgttgttttcttatttcaaatagcacttggttatggtaggacactacatcgtgtcccaaaccct |
373527 |
T |
|
| Q |
242 |
aaccctaac |
250 |
Q |
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||||||||| |
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| T |
373528 |
aaccctaac |
373536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 282 - 343
Target Start/End: Original strand, 373550 - 373611
Alignment:
| Q |
282 |
taatcttatacattctggtgctatcaagtgtaatatcaagcatagaagtgagacttgtttca |
343 |
Q |
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||||| |||||| |||| | ||||||||||||||||||||||| |||| ||| ||||||||| |
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| T |
373550 |
taatcatatacactctgctcctatcaagtgtaatatcaagcattgaagcgagtcttgtttca |
373611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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