View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18852_high_9 (Length: 434)
Name: NF18852_high_9
Description: NF18852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18852_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 118; Significance: 5e-60; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 163 - 304
Target Start/End: Complemental strand, 4857920 - 4857779
Alignment:
| Q |
163 |
ttcaattatagccgctcggaccagcttcttggaacaaatgtataaacgattttatcatggaaccgcgtaaactgttaagagctgatctggttttcgctca |
262 |
Q |
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| T |
4857920 |
ttcaattatagccgctcggaccagcttcttggaacaaatgtataaacgattttctcatggaaccgcataaactgttaagagctgatctggttttcgctca |
4857821 |
T |
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| Q |
263 |
ggtcatgattatatctttgtaaaaatcttcgtaaaatgctac |
304 |
Q |
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| T |
4857820 |
ggacatgattatttctttgttaaaatctttgtaaaatgctac |
4857779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 5176528 - 5176686
Alignment:
| Q |
1 |
ttgtgattagttacctggcctatgtttaatttattagtccttactgcatatgacattgtcaaacgtttgattgcaactagtgagaaagaattttaaacaa |
100 |
Q |
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| T |
5176528 |
ttgtgattagttacctggcctatgtctaatttatttttccgtactacatatgacattgtcaaatgtctgattgcagctagtgagaaagagtttcaaacaa |
5176627 |
T |
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| Q |
101 |
ttgctgaggaaaacctcaacaaaccaaagaaatacccatagtcaatgatggtgaactta |
159 |
Q |
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| T |
5176628 |
tcgctgaggaaaaccgcaacaaacaaaagaaaaacacatagtcaatgatggtgaactta |
5176686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 331 - 424
Target Start/End: Complemental strand, 4857790 - 4857693
Alignment:
| Q |
331 |
gtaaaatgctactttaataaaatacaagtaatagcttacaaccctcattcttaatacatcaacttttgtaa----gtaattcattatgagaccctatg |
424 |
Q |
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| T |
4857790 |
gtaaaatgctactttaatagaatacaagtaatagcttacaaccctcattcttaatacatcaaattttgtaagtaagtaattcattttgagaccctatg |
4857693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 47 - 166
Target Start/End: Complemental strand, 5133004 - 5132885
Alignment:
| Q |
47 |
catatgacattgtcaaacgtttgattgcaactagtgagaaagaattttaaacaattgctgaggaaaacctcaacaaaccaaagaaatacccatagtcaat |
146 |
Q |
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| T |
5133004 |
catatgacattgtcaaacgcctgattgctgctagtgagaaggagtttcaaacaattgcagaggaaaaccgcaacaaactaacaaaatgcccataatcaat |
5132905 |
T |
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| Q |
147 |
gatggtgaacttaggattca |
166 |
Q |
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| T |
5132904 |
gatggttaacttaggattca |
5132885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 424
Target Start/End: Original strand, 5162984 - 5163015
Alignment:
| Q |
393 |
cttttgtaagtaattcattatgagaccctatg |
424 |
Q |
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| T |
5162984 |
cttttgtaagtaattcattatgagaccctatg |
5163015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 422
Target Start/End: Original strand, 5184809 - 5184838
Alignment:
| Q |
393 |
cttttgtaagtaattcattatgagacccta |
422 |
Q |
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| T |
5184809 |
cttttgtaagtaattcattatgagacccta |
5184838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 124
Target Start/End: Complemental strand, 24995755 - 24995678
Alignment:
| Q |
47 |
catatgacattgtcaaacgtttgattgcaactagtgagaaagaattttaaacaattgctgaggaaaacctcaacaaac |
124 |
Q |
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| T |
24995755 |
catatgacattgttaagcgcataattgcagctagtgagaaagaatttcaatcaattacagaggaaaatcgcaacaaac |
24995678 |
T |
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