View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18852_low_13 (Length: 401)
Name: NF18852_low_13
Description: NF18852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18852_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 37 - 387
Target Start/End: Original strand, 39696514 - 39696864
Alignment:
| Q |
37 |
gtggtagttctgatcgtgaggtggacaggagtgatgaatctgatgttggtgatgatctttataaggatgaggatgacagaaagaaactttctgagatgac |
136 |
Q |
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| T |
39696514 |
gtggtagttctgatcgtgaggtggacaggagtgatgaatctgatgttggtgatgatctttataaggatgaggatgacagaaagaaactttctgagatgac |
39696613 |
T |
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| Q |
137 |
tgaacttcaaagagagatgattttgtctgatagggctgctaagaaggatgataaagatattttgtcgaagatagcatcgaagcgtgagaagggaaatgta |
236 |
Q |
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| T |
39696614 |
tgaacttcaaagagagatgattttgtctgatagggctgctaagaaggatgataaagatattttgtcgaagatagcatcgaagcgtgagaagggaaatgta |
39696713 |
T |
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| Q |
237 |
tcgagaagagagactccgcctcttccatcttctcgtatgatgtcatctactagatcttatgacaggtcagctgctaaggatggtgcattgaatgaactgc |
336 |
Q |
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| T |
39696714 |
tcgagaagagagactccgcctcttccatcttctcgtatgatgtcatctactagatcttatgacaggtcagctgctaaggatggtgcattgaatgaactgc |
39696813 |
T |
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| Q |
337 |
gtgctaagagactgaaacagcgagatccggaaacacagcgcgagctgaaag |
387 |
Q |
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| T |
39696814 |
gtgctaagaggctgaaacagcgagatccggaaacacagcgcgagctgaaag |
39696864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 66 - 232
Target Start/End: Original strand, 35691503 - 35691669
Alignment:
| Q |
66 |
agtgatgaatctgatgttggtgatgatctttataaggatgaggatgacagaaagaaactttctgagatgactgaacttcaaagagagatgattttgtctg |
165 |
Q |
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| T |
35691503 |
agtgatgaatcaaatatcggcgatgatctctacaaagatgaagatgacaggcggaagctttctgagatgagtgaacttcaaagagagatgattttgtcgg |
35691602 |
T |
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| Q |
166 |
atagggctgctaagaaggatgataaagatattttgtcgaagatagcatcgaagcgtgagaagggaaa |
232 |
Q |
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| T |
35691603 |
atagggcttcaaaaaaggacgataaaagtttgttgggaaagattgcatcaaagcgtgagaaaggaaa |
35691669 |
T |
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