View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18852_low_15 (Length: 393)

Name: NF18852_low_15
Description: NF18852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18852_low_15
NF18852_low_15
[»] chr3 (7 HSPs)
chr3 (228-376)||(11526867-11527016)
chr3 (177-279)||(11527017-11527119)
chr3 (16-116)||(11527179-11527279)
chr3 (38-104)||(48763529-48763595)
chr3 (37-82)||(5029899-5029944)
chr3 (38-83)||(14171215-14171260)
chr3 (195-223)||(48126979-48127007)
[»] chr2 (3 HSPs)
chr2 (178-257)||(38088182-38088260)
chr2 (240-340)||(38088279-38088379)
chr2 (35-79)||(28405076-28405120)
[»] chr6 (2 HSPs)
chr6 (38-108)||(904975-905045)
chr6 (38-104)||(5171252-5171318)
[»] chr5 (1 HSPs)
chr5 (34-108)||(10641329-10641403)
[»] chr8 (1 HSPs)
chr8 (36-86)||(42293493-42293543)


Alignment Details
Target: chr3 (Bit Score: 142; Significance: 2e-74; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 228 - 376
Target Start/End: Complemental strand, 11527016 - 11526867
Alignment:
Q  228 ttattgaagtttgataatcacctacatgatagttttttacattacacattacaaaataatactaaaagccttggatacaaaa-aacaccaatgtataata 326  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  11527016 ttattgaagtttgataatcacctacatgatagttttttacattacacattacaaaataatactaaaagccttggatacaaaacaacaccaatgtataata 11526917  T
Q  327 caccaaacaaccaagaccataccagtcagagattcttcactccatgaatc 376  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11526916 caccaaacaaccaagaccataccagtcagagattcttcactccatgaatc 11526867  T

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Target: chr3; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 177 - 279
Target Start/End: Complemental strand, 11527119 - 11527017
Alignment:
Q  177 gtatcgtcaattgataataatgtatcgttaattaaaatgcaacaccaagaattattgaagtttgataatcacctacatgatagttttttacattacacat 276  Q
    |||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11527119 gtatcgtcaattgagagtaatgtatcattaattaaaatgcaacaccaagaattattgaagtttgataatcacctacatgatagttttttacattacacat 11527020  T
Q  277 tac 279  Q
    |||    
T  11527019 tac 11527017  T

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Target: chr3; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 16 - 116
Target Start/End: Complemental strand, 11527279 - 11527179
Alignment:
Q  16 atcatgtgtttgttttagtaatactagattgatgacacgtgcgctgcacggatcttatgagctgaaatatatttactattagtagaatgcaatgaatgct 115  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||  || || ||||||||||||||||||    
T  11527279 atcatgtgtttgttttagtaatactagattgatgacacgtgcgccgcacgggtcttatgagctgaaatatatttgttaatattagaatgcaatgaatgct 11527180  T
Q  116 t 116  Q
    |    
T  11527179 t 11527179  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 104
Target Start/End: Complemental strand, 48763595 - 48763529
Alignment:
Q  38 actagattgatgacacgtgcgctgcacggatcttatgagctgaaatatatttactattagtagaatg 104  Q
    |||||||||||||| ||||||| |||||| |||||||||||| | || ||| |||||||||| ||||    
T  48763595 actagattgatgacccgtgcgccgcacgggtcttatgagctgtactacattcactattagtaaaatg 48763529  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 82
Target Start/End: Complemental strand, 5029944 - 5029899
Alignment:
Q  37 tactagattgatgacacgtgcgctgcacggatcttatgagctgaaa 82  Q
    ||||||||||||| | ||||||| |||||| |||||||||||||||    
T  5029944 tactagattgatggcccgtgcgccgcacgggtcttatgagctgaaa 5029899  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 14171215 - 14171260
Alignment:
Q  38 actagattgatgacacgtgcgctgcacggatcttatgagctgaaat 83  Q
    |||||||||||||| ||||||| |||||| ||||||||||| ||||    
T  14171215 actagattgatgacccgtgcgccgcacgggtcttatgagctaaaat 14171260  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 223
Target Start/End: Original strand, 48126979 - 48127007
Alignment:
Q  195 aatgtatcgttaattaaaatgcaacacca 223  Q
    |||||||||||||||||||||||||||||    
T  48126979 aatgtatcgttaattaaaatgcaacacca 48127007  T

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Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 178 - 257
Target Start/End: Original strand, 38088182 - 38088260
Alignment:
Q  178 tatcgtcaattgataataatgtatcgttaattaaaatgcaacaccaagaattattgaagtttgataatcacctacatgat 257  Q
    |||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  38088182 tatcgtcaattgataataatatatcattaattaaa-tgcaacaccaagaattattgaagtttgataatcatctacatgat 38088260  T

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Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 240 - 340
Target Start/End: Original strand, 38088279 - 38088379
Alignment:
Q  240 gataatcacctacatgatagttttttacattacacattacaaaataatactaaaagccttggatacaaaa-aacaccaatgtataatacaccaaacaacc 338  Q
    ||||| ||||| ||||||||||||||||||||| |||||| | |||||||||||||||  |||||||||| |||||||||||| ||||||||||||||||    
T  38088279 gataaccacctgcatgatagttttttacattacgcattacgacataatactaaaagccccggatacaaaacaacaccaatgta-aatacaccaaacaacc 38088377  T
Q  339 aa 340  Q
    ||    
T  38088378 aa 38088379  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 79
Target Start/End: Complemental strand, 28405120 - 28405076
Alignment:
Q  35 aatactagattgatgacacgtgcgctgcacggatcttatgagctg 79  Q
    ||||||||||||| ||| |||||| ||||||| ||||||||||||    
T  28405120 aatactagattgacgacccgtgcgatgcacgggtcttatgagctg 28405076  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 108
Target Start/End: Original strand, 904975 - 905045
Alignment:
Q  38 actagattgatgacacgtgcgctgcacggatcttatgagctgaaatatatttactattagtagaatgcaat 108  Q
    |||||||||||||| ||||||| ||| |||||||||||| || |||| ||| | |||||||| ||||||||    
T  904975 actagattgatgacccgtgcgccgcatggatcttatgagttgtaatacattcattattagtaaaatgcaat 905045  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 104
Target Start/End: Complemental strand, 5171318 - 5171252
Alignment:
Q  38 actagattgatgacacgtgcgctgcacggatcttatgagctgaaatatatttactattagtagaatg 104  Q
    |||||||||||||| ||||||  |||||| |||||||||||| | || ||| |||||||||| ||||    
T  5171318 actagattgatgacccgtgcgtcgcacgggtcttatgagctgtactacattcactattagtaaaatg 5171252  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 108
Target Start/End: Original strand, 10641329 - 10641403
Alignment:
Q  34 taatactagattgatgacacgtgcgctgcacggatcttatgagctgaaatatatttactattagtagaatgcaat 108  Q
    ||||||||||||||| || ||||| |||||||| ||||||||| || | || ||| |||||||||| ||||||||    
T  10641329 taatactagattgatcacccgtgcactgcacgggtcttatgagttgtactacattcactattagtaaaatgcaat 10641403  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 86
Target Start/End: Complemental strand, 42293543 - 42293493
Alignment:
Q  36 atactagattgatgacacgtgcgctgcacggatcttatgagctgaaatata 86  Q
    ||||||||||| |||| ||||||| |||||| |||||||||| ||||||||    
T  42293543 atactagattggtgacccgtgcgccgcacgggtcttatgagccgaaatata 42293493  T

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