View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18852_low_16 (Length: 390)
Name: NF18852_low_16
Description: NF18852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18852_low_16 |
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| [»] scaffold0015 (3 HSPs) |
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Alignment Details
Target: scaffold0015 (Bit Score: 349; Significance: 0; HSPs: 3)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 19 - 379
Target Start/End: Complemental strand, 11579 - 11219
Alignment:
| Q |
19 |
taagcttccattaggcatgaactcgtaaacaatgagaagttcttttttctcatagcaccaaccaatgagtttcaccaagtttttgtggtgaaggctacca |
118 |
Q |
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| T |
11579 |
taagcttccattaggcatgaactcgtaaacaatgagaagttcttttttctcatagcaccaaccaatgagtttcaccaagtttttgtggtgaaggctacca |
11480 |
T |
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| Q |
119 |
attgttgtaacttctgctataaactcttgctttccttgtcgagaatccttcgagactctcttcacagctatctctttattgtttccaaggattcctttat |
218 |
Q |
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| T |
11479 |
attgttgtaacttctgctataaactcttgctttccttgtcgagaatccttcgagactctcttcacagctatctctttattgtttccaaggattcctttat |
11380 |
T |
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| Q |
219 |
agacagttccaaatccgccttggccgagtttgttctgatggctgaatccatttgttgctttgaccaattcctttaactgatatttctttggagccataga |
318 |
Q |
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| T |
11379 |
agacagttccaaatccaccttggccgagtttgttctgatggctgaatccatttgttgctttgaccaattcctttaactgatatttctttggagccataga |
11280 |
T |
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| Q |
319 |
tgagtgttgaatttgatcctctatccttggatatgcatcttcttgaacctcatcacttctt |
379 |
Q |
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| T |
11279 |
cgagtgttgaatttgatcctctatccttggatatgcatcttcttgaacctcatcgcttctt |
11219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 365
Target Start/End: Complemental strand, 37266 - 36917
Alignment:
| Q |
19 |
taagcttccattaggcatgaactcgtaaacaatgagaagttcttttttctcatagcaccaaccaatgagtttcaccaagtttttgtggtgaaggctacca |
118 |
Q |
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| T |
37266 |
taagcttccatttggcatgaactcataaacaaggagaagctctttattttcatagcaccaaccaatgagtttcaccaagtttttgtggtgaaggcttcca |
37167 |
T |
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| Q |
119 |
attgttgtaacttctgctataaactcttgctttccttgtcgagaatccttcgagactctcttcacagctatctctttattg---tttccaaggattcctt |
215 |
Q |
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| T |
37166 |
attgttgtaacttcggctataaattctttctttccttgacgtgaattcttcgagactctcttcacagctatctctttattgttttttccaaggaatccct |
37067 |
T |
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| Q |
216 |
tatagacagttccaaatccgccttggccgagtttgttctgatggctgaatccatttgttgctttgaccaattcctttaactgatatttctttggagccat |
315 |
Q |
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|||| |||||||||||||| |||| || || ||||||||||||||||||||| ||||||||| | ||||||||||| ||||||||||||| ||||| |
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| T |
37066 |
tataaacagttccaaatcccccttcaccaagcttgttctgatggctgaatccacctgttgctttcatcaattcctttagtcgatatttctttggtgccat |
36967 |
T |
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| Q |
316 |
agatgagtgttgaatttgatcctctatccttggatatgcatcttcttgaa |
365 |
Q |
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| T |
36966 |
tgacgagtactgaatttgatcctctatccttggatatgtatcttcttgaa |
36917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015; HSP #3
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 23 - 369
Target Start/End: Original strand, 19161 - 19510
Alignment:
| Q |
23 |
cttccattaggcatgaactcgtaaacaatgagaagttcttttttctcatagcaccaaccaatgagtttcaccaagtttttgtggtgaaggctaccaattg |
122 |
Q |
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|||||||| ||||||||||| ||||||| |||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
19161 |
cttccatttggcatgaactcataaacaaggagaagctctttactttcatagcaccaaccaatgagtttcaccaagtttttgtggtgaaggcttccaattg |
19260 |
T |
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| Q |
123 |
ttgtaacttctgctataaactcttgctttccttgtcgagaatccttcgagactctcttcacagctatctctttattg---tttccaaggattcctttata |
219 |
Q |
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| T |
19261 |
ttgtaacttcggcgataaattctttctttccttgacgcgaattctttgagactctcttcacagctatctctttattgatttttccaaggattcccttata |
19360 |
T |
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| Q |
220 |
gacagttccaaatccgccttggccgagtttgttctgatggctgaatccatttgttgctttgaccaattcctttaactgatatttctttggagccatagat |
319 |
Q |
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|| ||||||||||| || | || || ||||||||||||||||||||| |||||| || | ||||||||||| ||||||||||||||||||||||| |
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| T |
19361 |
aacggttccaaatccaccctcaccaagcttgttctgatggctgaatccacctgttgcattcatcaattcctttagtcgatatttctttggagccatagat |
19460 |
T |
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| Q |
320 |
gagtgttgaatttgatcctctatccttggatatgcatcttcttgaacctc |
369 |
Q |
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| T |
19461 |
gagtgttgaatttgatcctcaatccttggatatgtatcttcttgaacctc |
19510 |
T |
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