View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18852_low_17 (Length: 387)
Name: NF18852_low_17
Description: NF18852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18852_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 58 - 370
Target Start/End: Complemental strand, 14578251 - 14577944
Alignment:
| Q |
58 |
ttttatatctaactaaaggtattatgcttccgacaaaacccaccacatttccggtacatatatactgtacttcacaagacatcataaactcccttcgttt |
157 |
Q |
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| T |
14578251 |
ttttatatctaactataggtattatgcttccgacaaaacccaccacatttccggtacatatatact-----tcacaagacatcataaactcccttcgttt |
14578157 |
T |
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| Q |
158 |
ctctgaatcaatgaacatgcaaaatatgaagaagataaacttaaaccattgatttcacttattccaaattgaatttcctaccatcgaatcaattcccaaa |
257 |
Q |
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| T |
14578156 |
ctctgaatcaatgaacatgcaaaatatgaagaagataaacttaaaccattgatttcacttattccaaattgaatttcctaccatcgaatcaattcccaaa |
14578057 |
T |
|
| Q |
258 |
gcttgcaagccaacgtacatccacacctattttcacaagttaggaagatttgtcaaccattttcatttgaaactactccgttggttcattacaaacgggg |
357 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14578056 |
gcttgcaagccaacgtacatccacacctattttcacaagttaggaagatttgtcaaccattttcatttgaaactactccgttggttcattacaaacgggg |
14577957 |
T |
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| Q |
358 |
taaagccaagtat |
370 |
Q |
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||||||||||||| |
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| T |
14577956 |
taaagccaagtat |
14577944 |
T |
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