View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18852_low_2 (Length: 746)
Name: NF18852_low_2
Description: NF18852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18852_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 573; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 1 - 731
Target Start/End: Original strand, 39624948 - 39625720
Alignment:
| Q |
1 |
cgtacctcatattcaaggcaggtacaagcagattcaatacaagactcaagagctttgaactcaaacggaagctgcttaggagccgacgcacctgctacgc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
39624948 |
cgtacctcatattcaaggcaggtacaagcagattcaatacaagactcaagagctttgaactcaaacggaagctgcttaggagccgacacacctgctacgc |
39625047 |
T |
|
| Q |
101 |
caattgattcattatttggaaaatgagtaggactctgcacc---------------------aaaggtttgacttcacaatgactatcaacgtcatcgct |
179 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
39625048 |
caattgattcattatttggaaaatgagtaggactctgcaccgatggcaacaactcctccaacaaaggtttgacttcacaatgactatcaacgtcatcgct |
39625147 |
T |
|
| Q |
180 |
cccccgcatgggcacttgaatattattagaaagaagaacacgcttttgaagatcttgaagaaagcgaataaaggaagggtcaattgaattaatcataagc |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
39625148 |
cccccgcatgggcacttgaatattattagaaagaagaacacgcttttgaagatcttgaagaaagcgaataaagaaagggtcaattgaattaatcataagc |
39625247 |
T |
|
| Q |
280 |
acttcat----------aatcgctctaatgtgttctaagttaacaataatggctttttctcgtcctaagatagaagaaggttgagaaagctttgtatcaa |
369 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
39625248 |
acttcattcgaagtgataatcgctctaatgtgttctaagttaacaataatggctttttctcgtcctaagatagaagaaggctgagaaagctttgtatcaa |
39625347 |
T |
|
| Q |
370 |
agactctaaggtcacgtgcaggtaaacctgttcgtcgcatgatggagtgtttgtcgatatcctcgacacgtgattcacctgtttcaaatactaccatcca |
469 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39625348 |
agactctaaggtcacgtgcaggtaaacctgttcgtcgcatgatggagtgtttgtcgatatcctcgacacgtgattcacctgtttcaaatactaccatcca |
39625447 |
T |
|
| Q |
470 |
actctttgcaataccctttcgtttacttcctctcactgtcgccaccattgtc---------------gctgctttttccttctcttctttactcaacctt |
554 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |
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| T |
39625448 |
actctttgcaatacccttttgtttacttcctctcactgtcgccaccattgtcgctgccatccctactgctgctttttccttctcttctttactcaacatt |
39625547 |
T |
|
| Q |
555 |
cccatcgcacatcaatcttaatcaattccgatgcaatatttctctgtttaatttgtaagctaatactaattttgatgaataactaggtctttcgatctta |
654 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39625548 |
cccatcgcacatcaatcttaatcaattccgatgcaatatttctctg-----tttgtaagctaatactaattttgatgaataactaggtctttcgatctta |
39625642 |
T |
|
| Q |
655 |
gtttaaatttccttaaatag-ttgttaggtgattactggttagttatgataacactagaacttctttttccctatatt |
731 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
39625643 |
gtttaaatttccttaaatagtttgttaggtgattactggttagttatgataacactagaacttcttttttcctatatt |
39625720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 1 - 731
Target Start/End: Original strand, 39634498 - 39635270
Alignment:
| Q |
1 |
cgtacctcatattcaaggcaggtacaagcagattcaatacaagactcaagagctttgaactcaaacggaagctgcttaggagccgacgcacctgctacgc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
39634498 |
cgtacctcatattcaaggcaggtacaagcagattcaatacaagactcaagagctttgaactcaaacggaagctgcttaggagccgacacacctgctacgc |
39634597 |
T |
|
| Q |
101 |
caattgattcattatttggaaaatgagtaggactctgcacc---------------------aaaggtttgacttcacaatgactatcaacgtcatcgct |
179 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
39634598 |
caattgattcattatttggaaaatgagtaggactctgcaccgatggcaacaactcctccaacaaaggtttgacttcacaatgactatcaacgtcatcgct |
39634697 |
T |
|
| Q |
180 |
cccccgcatgggcacttgaatattattagaaagaagaacacgcttttgaagatcttgaagaaagcgaataaaggaagggtcaattgaattaatcataagc |
279 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
39634698 |
cccccgcatgggcacttgaatattattagaaagaagaacacgcttttgaagatcttgaagaaagcgaataaagaaagggtcaattgaattaatcataagc |
39634797 |
T |
|
| Q |
280 |
acttcat----------aatcgctctaatgtgttctaagttaacaataatggctttttctcgtcctaagatagaagaaggttgagaaagctttgtatcaa |
369 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
39634798 |
acttcattcgaagtgataatcgctctaatgtgttctaagttaacaataatggctttttctcgtcctaagatagaagaaggctgagaaagctttgtatcaa |
39634897 |
T |
|
| Q |
370 |
agactctaaggtcacgtgcaggtaaacctgttcgtcgcatgatggagtgtttgtcgatatcctcgacacgtgattcacctgtttcaaatactaccatcca |
469 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39634898 |
agactctaaggtcacgtgcaggtaaacctgttcgtcgcatgatggagtgtttgtcgatatcctcgacacgtgattcacctgtttcaaatactaccatcca |
39634997 |
T |
|
| Q |
470 |
actctttgcaataccctttcgtttacttcctctcactgtcgccaccattgtc---------------gctgctttttccttctcttctttactcaacctt |
554 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |
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| T |
39634998 |
actctttgcaatacccttttgtttacttcctctcactgtcgccaccattgtcgctgccatccctactgctgctttttccttctcttctttactcaacatt |
39635097 |
T |
|
| Q |
555 |
cccatcgcacatcaatcttaatcaattccgatgcaatatttctctgtttaatttgtaagctaatactaattttgatgaataactaggtctttcgatctta |
654 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39635098 |
cccatcgcacatcaatcttaatcaattccgatgcaatatttctctg-----tttgtaagctaatactaattttgatgaataactaggtctttcgatctta |
39635192 |
T |
|
| Q |
655 |
gtttaaatttccttaaatag-ttgttaggtgattactggttagttatgataacactagaacttctttttccctatatt |
731 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
39635193 |
gtttaaatttccttaaatagtttgttaggtgattactggttagttatgataacactagaacttcttttttcctatatt |
39635270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 225 - 475
Target Start/End: Original strand, 40276473 - 40276733
Alignment:
| Q |
225 |
ttgaagatcttgaagaaagcgaataaaggaagggtcaattgaattaatcataagcacttcat----------aatcgctctaatgtgttctaagttaaca |
314 |
Q |
| |
|
||||||||||||||| || |||| |||| |||||| | |||||||||||||||||||||| ||| ||| |||||||||||||||||| |
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| T |
40276473 |
ttgaagatcttgaaggaaacgaagaaagaaagggtttgtggaattaatcataagcacttcattggaagtgataattgcttgaatgtgttctaagttaacg |
40276572 |
T |
|
| Q |
315 |
ataatggctttttctcgtcctaagatagaagaaggttgagaaagctttgtatcaaagactctaaggtcacgtgcaggtaaacctgttcgtcgcatgatgg |
414 |
Q |
| |
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| ||| ||||||||||||||||||||||||||||| | ||| || |||| ||||| ||||||||||||| | |||||| ||||||||| ||||||||| |
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| T |
40276573 |
acaatagctttttctcgtcctaagatagaagaagggttagagagttttggatcaagagctctaaggtcacgcgtaggtaaccctgttcgttgcatgatgg |
40276672 |
T |
|
| Q |
415 |
agtgtttgtcgatatcctcgacacgtgattcacctgtttcaaatactaccatccaactctt |
475 |
Q |
| |
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|||||||||| ||||| || || |||||||||||||| || ||||||||||||||||||| |
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|
| T |
40276673 |
agtgtttgtcaatatcttcaacgcgtgattcacctgtctctgatactaccatccaactctt |
40276733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 40276245 - 40276329
Alignment:
| Q |
3 |
tacctcatattcaaggcaggtacaagcagattcaatacaagactcaagagctttgaactcaaacggaagctgcttaggagccgac |
87 |
Q |
| |
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||||||| |||||||||| ||||||| |||||||||||||| |||||||||||| |||||||| || | ||||||||||||||| |
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|
| T |
40276245 |
tacctcagattcaaggcacgtacaagtagattcaatacaagcctcaagagctttaaactcaaaaggtaattgcttaggagccgac |
40276329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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