View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18852_low_20 (Length: 366)
Name: NF18852_low_20
Description: NF18852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18852_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 150; Significance: 3e-79; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 153 - 329
Target Start/End: Original strand, 13712495 - 13712665
Alignment:
| Q |
153 |
catcaattaatttcgtcttcttttcaaatttagcttttgcatttgcatctgagataaacttaaaacgtactagaacttaaggactaaattgactagctcc |
252 |
Q |
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| T |
13712495 |
catcaattaatttcgtcttcttttcaaatttagcttttg------catctgagataaacttaaaacatactagaacttaaggactaaattgactagctcc |
13712588 |
T |
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| Q |
253 |
ttacaatttaagtgagtagaaagatgatacaatgtaataatatattaccgatgctgacaaaggaggatgcatgatta |
329 |
Q |
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| T |
13712589 |
ttacaatttaagtgagtagaaagatgatacaatgtaataatatattaccgatgctgacaaaggaggatgcatgatta |
13712665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 67 - 119
Target Start/End: Original strand, 13712409 - 13712461
Alignment:
| Q |
67 |
tattgtagtcgttcaaattgtaaagatttgtcaatttagtgcttcaactttgt |
119 |
Q |
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| T |
13712409 |
tattgtagtcgttctaattgtaaagatttgtcaatttagtccttcaactttgt |
13712461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 43
Target Start/End: Original strand, 13712372 - 13712411
Alignment:
| Q |
4 |
atatacgagtataaaaaacaaactaaaacaaacactatat |
43 |
Q |
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| T |
13712372 |
atatacgagtataaaaaacaaactaaaacaaacactatat |
13712411 |
T |
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