View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18852_low_21 (Length: 363)
Name: NF18852_low_21
Description: NF18852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18852_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 19 - 348
Target Start/End: Original strand, 7329619 - 7329948
Alignment:
| Q |
19 |
gtgcatctggtatgatatgattttatcttatgagttagaatctgtttgtttaggatgtattgacacttctctagaaaaggtttgctttagtagcgacaat |
118 |
Q |
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| T |
7329619 |
gtgcatctggtatgatatgattttatcttatgagttagaatctgtttgtttaggatgtattgacacttctctagaaaaggtttgctttagtagcgacaat |
7329718 |
T |
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| Q |
119 |
agcgatgcaacacaacaatattctataaatctgatcacaaagtctgatgcatccagttctgatttaaggtcatgtaactaatgaatctgaaatgaatgaa |
218 |
Q |
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| T |
7329719 |
agcaatgcaacacaacaatattctataaatctgatcacaaagtctgatgcatccagttctgatttaaggtcatgtaactaatgaatctgaaatgaatgaa |
7329818 |
T |
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| Q |
219 |
atgagctttggaaacttgagaatgaggaaaactctattatgaaattaccactgcagtacatatctgatagttccaagcactacagtttgcaacttgttgg |
318 |
Q |
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| T |
7329819 |
atgaactttggaaacttgagaatgaggaaaactctattaggaaattaccactgcagtacatatctgatagttccaagcactacagtttgcaacttgttgg |
7329918 |
T |
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| Q |
319 |
catgttataagatgctataaacttgagaat |
348 |
Q |
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| T |
7329919 |
catattataagatgctataaacttgagaat |
7329948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 43 - 264
Target Start/End: Complemental strand, 7310334 - 7310115
Alignment:
| Q |
43 |
atcttatgagttagaatctgtttgtttaggatgtattgacacttctctagaaaaggtttgctttagtagcgacaatagcgatgcaacacaacaatattct |
142 |
Q |
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| T |
7310334 |
atcttctgagttagaatctgtttgtttaggatgtattgacacttatctcgaaaagttttgctttagttgcgacaatagcgatgca---caacaatattct |
7310238 |
T |
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| Q |
143 |
ataaatctgatcacaaagtctgatgcatccagttctgatttaaggtcatgtaactaatgaatctg-aaatgaatgaaatgagctttggaaacttgagaat |
241 |
Q |
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| T |
7310237 |
ataaatctgatcacaaagtctgatgcatccagttctgatttagggtcatgttactgatgcatctgaaaatgaattagaagaacttcggaaacttgagaaa |
7310138 |
T |
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| Q |
242 |
gaggaaaactctattatgaaatt |
264 |
Q |
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| T |
7310137 |
ggggaaaactttattatcaaatt |
7310115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 210
Target Start/End: Complemental strand, 7300924 - 7300846
Alignment:
| Q |
130 |
acaacaatattctataaatctgatcacaaagtctgatgcatccagttctgatttaaggtcatgtaactaatgaatctgaaa |
210 |
Q |
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| T |
7300924 |
acaacaacattctgtaaatttgatcgca--gtctgatgcatccagttctgatttagggtcatgttactaatgcatccgaaa |
7300846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 214 - 261
Target Start/End: Complemental strand, 22482321 - 22482274
Alignment:
| Q |
214 |
atgaaatgagctttggaaacttgagaatgaggaaaactctattatgaa |
261 |
Q |
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| T |
22482321 |
atgaaatgagctttggaaagttaagaatcgggaaaactctattatgaa |
22482274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 320
Target Start/End: Complemental strand, 7310079 - 7310039
Alignment:
| Q |
280 |
atctgatagttccaagcactacagtttgcaacttgttggca |
320 |
Q |
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||||||| ||||||||||||||| |||| |||||||||||| |
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| T |
7310079 |
atctgattgttccaagcactacattttgtaacttgttggca |
7310039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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