View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18852_low_25 (Length: 307)
Name: NF18852_low_25
Description: NF18852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18852_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 19 - 296
Target Start/End: Original strand, 10011068 - 10011346
Alignment:
| Q |
19 |
tctccttccattgtctgtatgctttcaatacacactttcctttaaacaaagaagaagcaannnnnnnnnnnnnnnn-atggaagaaagaccaatcgaacc |
117 |
Q |
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| T |
10011068 |
tctccttccattgtctgtatgctttcaatacacactttcctttaaacaaaaaagaagcaattttttttttggtttttatggaagaaagaccaatcgaacc |
10011167 |
T |
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| Q |
118 |
tatgnnnnnnntatagaagagaggtgctcctgttttggagaattggacataaaaaattttccttaaaaattgtctttttgttctatattctttctcgttt |
217 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10011168 |
tatgaaaaaaatatagaagagaggtgctcctgttttggagaattggacataaaaaattttccttaaaaattgtctttttgttctatattctttctcgttt |
10011267 |
T |
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| Q |
218 |
ctgaagcagacgagnnnnnnnnnnnnnnnnnnncgaagggagacaaaaatgatttagaagagttggacatcaaattcat |
296 |
Q |
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| T |
10011268 |
ctgaagcagaagagttatttttctttcctttttcgaagggagacataaatgatttagaagagttggacatcaaattcat |
10011346 |
T |
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Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 134 - 221
Target Start/End: Original strand, 561565 - 561652
Alignment:
| Q |
134 |
aagagaggtgctcctgttttggagaattggacataaaaaattttccttaaaaattgtctttttgttctatattctttctcgtttctga |
221 |
Q |
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| T |
561565 |
aagagaggtgttcctgttttggagaattggacatcaaattttttccttcaaaattgtccttttcttctatattctttctcgtttctga |
561652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 561438 - 561487
Alignment:
| Q |
19 |
tctccttccattgtctgtatgctttcaatacacactttcctttaaacaaa |
68 |
Q |
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| T |
561438 |
tctcattcaattgtatgtatgctttcattagacactttcctttaaacaaa |
561487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 134 - 221
Target Start/End: Complemental strand, 17688868 - 17688782
Alignment:
| Q |
134 |
aagagaggtgctcctgttttggagaattggacataaaaaattttccttaaaaattgtctttttgttctatattctttctcgtttctga |
221 |
Q |
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| T |
17688868 |
aagagaggtgttcctgttttggagaattagacatcaaattttttctttaaaa-ttgtccttttcttctatattctttctcgtttctga |
17688782 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 74
Target Start/End: Complemental strand, 17688983 - 17688937
Alignment:
| Q |
28 |
attgtctgtatgctttcaatacacactttcctttaaacaaagaagaa |
74 |
Q |
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| T |
17688983 |
attgtatgtatgctttcattagacactttcctttaaacaaaaaagaa |
17688937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 134 - 221
Target Start/End: Original strand, 1678868 - 1678954
Alignment:
| Q |
134 |
aagagaggtgctcctgttttggagaattggacataaaaaattttccttaaaaattgtctttttgttctatattctttctcgtttctga |
221 |
Q |
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| T |
1678868 |
aagagaggtgttcctgttttggagaattagacatcaaattttttc-ttcaaaattgtccttttcttctatattctttctcgtttctga |
1678954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 74
Target Start/End: Original strand, 1678749 - 1678795
Alignment:
| Q |
28 |
attgtctgtatgctttcaatacacactttcctttaaacaaagaagaa |
74 |
Q |
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| T |
1678749 |
attgtatgtatgctttcattagacactttcctttaaacaaaaaagaa |
1678795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 4778812 - 4778852
Alignment:
| Q |
28 |
attgtctgtatgctttcaatacacactttcctttaaacaaa |
68 |
Q |
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| T |
4778812 |
attgtatgtatgctttcattagacactttcctttaaacaaa |
4778852 |
T |
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