View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18852_low_3 (Length: 663)
Name: NF18852_low_3
Description: NF18852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18852_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 565; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 65 - 653
Target Start/End: Complemental strand, 27442538 - 27441950
Alignment:
| Q |
65 |
gtatgatatgtcacagccaccggccgagccaccacaaaggtagacgtatacagctatggtgtgattctaatggggatgataactggaaaaagagcactcg |
164 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27442538 |
gtatgatatgtcacagccaccggccgagccaccacaaaggtagacgtatacagctatggtgtgattctaatggggatgataactggaaaaagagcactcg |
27442439 |
T |
|
| Q |
165 |
acgacagccgacaagacaatgtcatcaaccttgctgaatggttcatcaaacagtcatttgaaaatgtcattgatccagcaatgaaaatggacgaggaagg |
264 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27442438 |
acgacagccaacaagacaatgtcatcaaccttgctgaatggttcatcaaacagtcatttgaaaatgtcattgatccagcaatgaaaatggacgaggaagg |
27442339 |
T |
|
| Q |
265 |
cttggagagtttcaggactattgcagaattggcaagacaatgctgtgaaaaggagcctaataagcatcgcgacatgcgatacgtagtccatgtgctagca |
364 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
27442338 |
cttggagagtttcaggactattgcagaattggcaagacactgctgtgaaaaggagcctaataagcgtcccgacatgcgatacgtagtccatgtgctagca |
27442239 |
T |
|
| Q |
365 |
cctcttgttgagatttggaagccggctgaacctgatgccgatgacatgcatggtatggacttgcctatgagtttacctgaagaaatgagtaagtggaaga |
464 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
27442238 |
cctcttgttgagatttggaagccggctgaacctgatgccgatgacatgcatggtatggacttgcctatgagtttacctgaagaaatgagcaagtggaaga |
27442139 |
T |
|
| Q |
465 |
accttgaaggaatgagcagcatattagaggataccattcaggaatattaggtgcttggaagaataagaagtagtcaaggacttattttatgataccagtt |
564 |
Q |
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| T |
27442138 |
accttgaaggaatgagcagcatattagaggataccattcaggaaaattaggtgcttggaagaataagaagtagtcaaggacttattttatgataccagtt |
27442039 |
T |
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| Q |
565 |
agtgcataatactgcaaggaattcattttgatgattttccctgaatattattttgatgctcataagatgcttagtaaaattcatctctg |
653 |
Q |
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| T |
27442038 |
agtgcataatactgcaaggaattcattttgatgattttccctgaatattattttgatgctcataagatgcttagtaaaattcatctctg |
27441950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 27444241 - 27444191
Alignment:
| Q |
18 |
caattcaagttttgaggggagctaccaacaacttcagtgaaagcaacgtat |
68 |
Q |
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| T |
27444241 |
caattcaagttttgaggcgagctactaacaacttcagtgaaagcaacgtat |
27444191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 7e-57; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 218 - 482
Target Start/End: Original strand, 11838064 - 11838328
Alignment:
| Q |
218 |
tcatttgaaaatgtcattgatccagcaatgaaaatggacgaggaaggcttggagagtttcaggactattgcagaattggcaagacaatgctgtgaaaagg |
317 |
Q |
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||||||||||| |||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||| |||||| || || || |||| || || |
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| T |
11838064 |
tcatttgaaaaggtcattgatccagcaatggacatcgacgaggaaggcttggagagtttcaggactattgcaggattggctagccactgttgtgcaaggg |
11838163 |
T |
|
| Q |
318 |
agcctaataagcatcgcgacatgcgatacgtagtccatgtgctagcacctcttgttgagatttggaagccggctgaacctgatgccgatgacatgcatgg |
417 |
Q |
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|||||||| ||| || |||||| || ||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||| ||||| || |||| |
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| T |
11838164 |
agcctaatcagcgtcctgacatgggacacgtagtgaatgtgctagcaccccttgtcgagatttggaagccggctgaacctgatgttgatgatatatatgg |
11838263 |
T |
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| Q |
418 |
tatggacttgcctatgagtttacctgaagaaatgagtaagtggaagaaccttgaaggaatgagca |
482 |
Q |
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| T |
11838264 |
gattgacttggatatgagtttgcctcaagcactgattaagtggcagaatcatgaaggaatgagca |
11838328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 224 - 482
Target Start/End: Complemental strand, 11855769 - 11855511
Alignment:
| Q |
224 |
gaaaatgtcattgatccagcaatgaaaatggacgaggaaggcttggagagtttcaggactattgcagaattggcaagacaatgctgtgaaaaggagccta |
323 |
Q |
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||||| |||||||||||||||||| | || ||||||||||||||||||||||||||| ||| ||||||||||||| || ||||||| || ||||||| |
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| T |
11855769 |
gaaaaggtcattgatccagcaatggacatcaacgaggaaggcttggagagtttcaggatcatttcagaattggcaagccactgctgtgcaagggagcctc |
11855670 |
T |
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| Q |
324 |
ataagcatcgcgacatgcgatacgtagtccatgtgctagcacctcttgttgagatttggaagccggctgaacctgatgccgatgacatgcatggtatgga |
423 |
Q |
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| T |
11855669 |
atcagcgtcccgatatgggatacgtagtgaatgtgttagcacctcttgttgagatttggaagccggctgaacctaatgctgatgacatgtatgggattga |
11855570 |
T |
|
| Q |
424 |
cttgcctatgagtttacctgaagaaatgagtaagtggaagaaccttgaaggaatgagca |
482 |
Q |
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|||| |||| |||| ||| ||| | |||||||| | |||| |||||||||||||||| |
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| T |
11855569 |
cttgtatatgggtttgcctcaagcaccgagtaagttgcagaatcttgaaggaatgagca |
11855511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 218 - 482
Target Start/End: Original strand, 11850747 - 11851011
Alignment:
| Q |
218 |
tcatttgaaaatgtcattgatccagcaatgaaaatggacgaggaaggcttggagagtttcaggactattgcagaattggcaagacaatgctgtgaaaagg |
317 |
Q |
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||||| ||||| |||||||||||||||||| | || |||||||||||| ||||||||||||||||||| |||| ||||||||| ||||| |||| || || |
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| T |
11850747 |
tcattcgaaaaggtcattgatccagcaatggacatagacgaggaaggcctggagagtttcaggactatggcaggattggcaagccaatgttgtgcaaggg |
11850846 |
T |
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| Q |
318 |
agcctaataagcatcgcgacatgcgatacgtagtccatgtgctagcacctcttgttgagatttggaagccggctgaacctgatgccgatgacatgcatgg |
417 |
Q |
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| T |
11850847 |
agcctcatcagcgtcctgacatgggacatgtagtgaatgtgctagcacctcttgtcgagatttggaagccggctgaacctgaagctgatgacatgtatgg |
11850946 |
T |
|
| Q |
418 |
tatggacttgcctatgagtttacctgaagaaatgagtaagtggaagaaccttgaaggaatgagca |
482 |
Q |
| |
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| T |
11850947 |
gattgacttggatataagttttcctcaaggacttagtaagtggccgaatcttgaaggaacgagca |
11851011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 66 - 153
Target Start/End: Original strand, 11837897 - 11837984
Alignment:
| Q |
66 |
tatgatatgtcacagccaccggccgagccaccacaaaggtagacgtatacagctatggtgtgattctaatggggatgataactggaaa |
153 |
Q |
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||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||| |
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| T |
11837897 |
tatgatatgtcacagtcactggccgagtcaccacaaaggtagacgtatacagctatggtgtgattcttatggagatgataaccggaaa |
11837984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 65 - 152
Target Start/End: Original strand, 11850579 - 11850666
Alignment:
| Q |
65 |
gtatgatatgtcacagccaccggccgagccaccacaaaggtagacgtatacagctatggtgtgattctaatggggatgataactggaa |
152 |
Q |
| |
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|||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||| |||||||| |||| ||||||||| |||| |
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| T |
11850579 |
gtatgatatgtcacagtcaccggtcgagtcaccacaaaggtagacgtatacagctatggcgtgattcttatggagatgataaccggaa |
11850666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 65 - 158
Target Start/End: Complemental strand, 11855943 - 11855850
Alignment:
| Q |
65 |
gtatgatatgtcacagccaccggccgagccaccacaaaggtagacgtatacagctatggtgtgattctaatggggatgataactggaaaaagag |
158 |
Q |
| |
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|||||||||||||||| ||||||||||| |||||||||| ||||||| ||||||||||| |||||||| |||| ||||||||| ||||| |||| |
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| T |
11855943 |
gtatgatatgtcacagtcaccggccgagtcaccacaaagttagacgtgtacagctatggcgtgattcttatggagatgataaccggaaagagag |
11855850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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