View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18852_low_31 (Length: 260)

Name: NF18852_low_31
Description: NF18852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18852_low_31
NF18852_low_31
[»] chr8 (2 HSPs)
chr8 (1-260)||(41739808-41740067)
chr8 (137-190)||(33940437-33940490)
[»] chr6 (4 HSPs)
chr6 (8-132)||(4845909-4846033)
chr6 (132-190)||(2936143-2936201)
chr6 (132-190)||(19973732-19973790)
chr6 (132-190)||(24044928-24044986)
[»] chr3 (5 HSPs)
chr3 (134-260)||(26445025-26445145)
chr3 (137-255)||(2353265-2353377)
chr3 (132-189)||(9372208-9372265)
chr3 (132-219)||(19930008-19930089)
chr3 (132-219)||(42253534-42253615)
[»] chr1 (4 HSPs)
chr1 (137-260)||(21501181-21501298)
chr1 (39-93)||(9111654-9111708)
chr1 (150-189)||(38828683-38828722)
chr1 (132-189)||(43254179-43254236)
[»] scaffold0076 (1 HSPs)
scaffold0076 (8-81)||(6910-6983)
[»] chr7 (4 HSPs)
chr7 (132-190)||(2609597-2609655)
chr7 (137-190)||(15569635-15569688)
chr7 (132-190)||(13815802-13815860)
chr7 (132-189)||(15169999-15170056)
[»] chr4 (3 HSPs)
chr4 (137-189)||(11914059-11914111)
chr4 (137-188)||(31767445-31767496)
chr4 (132-190)||(19888148-19888206)
[»] chr2 (2 HSPs)
chr2 (146-260)||(66102-66210)
chr2 (226-260)||(27083021-27083055)


Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 41740067 - 41739808
Alignment:
Q  1 tctctcatagcaatttggagtgacacttcctgattagaaaaataccacttttccaccaacacaaaaactatttctttcttctcaatttttctttttgggt 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  |  ||    
T  41740067 tctctcatagcaatttggagtgacacttcctgatcagaaaaataccacttttccaccaacacaaaaactctttctttcttctcaatttttcttcctatgt 41739968  T
Q  101 tacattttacatgtttattaaattcaagttgtgcgattatgagacggataaatccttaaggatagtgacttcatcacgcctcaggttataattacataac 200  Q
    |||||||||||||||||| ||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41739967 tacattttacatgtttatcaaatttaaactgtgcgattatgagacggataaatccttaaggatagtgacttcatcacgcctcaggttataattacataac 41739868  T
Q  201 tgtttactattttgcaggttagatatgagttgttggtgaaggatattgatagagtcatgt 260  Q
    |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  41739867 tgtttactattttgcaggttagatatgagttgttagtgaagaatattgatagagtcatgt 41739808  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 33940490 - 33940437
Alignment:
Q  137 ttatgagacggataaatccttaaggatagtgacttcatcacgcctcaggttata 190  Q
    |||||||||||||||||||||||||| ||||||||| ||| |||||||||||||    
T  33940490 ttatgagacggataaatccttaaggacagtgacttcgtcaagcctcaggttata 33940437  T

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Target: chr6 (Bit Score: 69; Significance: 5e-31; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 8 - 132
Target Start/End: Complemental strand, 4846033 - 4845909
Alignment:
Q  8 tagcaatttggagtgacacttcctgattagaaaaataccacttttccaccaacacaaaaactatttctttcttctcaatttttctttttgggttacattt 107  Q
    ||||||||||| | |||||||| |||| ||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||  |||||||||| |    
T  4846033 tagcaatttggggagacacttcttgatcagaaaaataccacttttccaccaacacaaaagctctttctttcttcccaatttttcttcctgggttacatct 4845934  T
Q  108 tacatgtttattaaattcaagttgt 132  Q
      | ||||||| |||||||||||||    
T  4845933 cccgtgtttatcaaattcaagttgt 4845909  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 190
Target Start/End: Complemental strand, 2936201 - 2936143
Alignment:
Q  132 tgcgattatgagacggataaatccttaaggatagtgacttcatcacgcctcaggttata 190  Q
    |||| ||||||| |||||||||||||||||| ||||||||| |||| ||||| ||||||    
T  2936201 tgcgcttatgaggcggataaatccttaaggacagtgacttcgtcacacctcatgttata 2936143  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 19973732 - 19973790
Alignment:
Q  132 tgcgattatgagacggataaatccttaaggatagtgacttcatcacgcctcaggttata 190  Q
    |||| ||||||| |||||||||| ||||||| ||||||||  |||||||||||||||||    
T  19973732 tgcgcttatgaggcggataaatctttaaggacagtgactttgtcacgcctcaggttata 19973790  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 190
Target Start/End: Complemental strand, 24044986 - 24044928
Alignment:
Q  132 tgcgattatgagacggataaatccttaaggatagtgacttcatcacgcctcaggttata 190  Q
    |||| ||||||| || ||||||||||||||| ||||||||  |||||||||| ||||||    
T  24044986 tgcgcttatgaggcgaataaatccttaaggacagtgactttgtcacgcctcatgttata 24044928  T

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Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 134 - 260
Target Start/End: Complemental strand, 26445145 - 26445025
Alignment:
Q  134 cgattatgagacggataaatccttaaggatagtgacttcatcacgcctcaggttataattacataactgtttactattttgcaggttagatatgagttgt 233  Q
    |||||||||| |||||||||||||||||| ||||||||  ||| |||||| ||||||      || | ||||| |||||||||||||| |||||||||||    
T  26445145 cgattatgaggcggataaatccttaaggacagtgactttgtcatgcctcatgttata------tatccgtttattattttgcaggttacatatgagttgt 26445052  T
Q  234 tggtgaaggatattgatagagtcatgt 260  Q
    |||||||||||||||||||||| ||||    
T  26445051 tggtgaaggatattgatagagttatgt 26445025  T

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Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 137 - 255
Target Start/End: Original strand, 2353265 - 2353377
Alignment:
Q  137 ttatgagacggataaatccttaaggatagtgacttcatcacgcctcaggttataattacataactgtttactattttgcaggttagatatgagttgttgg 236  Q
    ||||||| |||||||||||||||||| | ||||||||||| ||||||||||||      ||||| ||||| |||||||||||||| ||||||||||||||    
T  2353265 ttatgaggcggataaatccttaaggacaatgacttcatcatgcctcaggttat------ataacggtttattattttgcaggttacatatgagttgttgg 2353358  T
Q  237 tgaaggatattgatagagt 255  Q
    || || || ||||||||||    
T  2353359 tggagaatgttgatagagt 2353377  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 189
Target Start/End: Complemental strand, 9372265 - 9372208
Alignment:
Q  132 tgcgattatgagacggataaatccttaaggatagtgacttcatcacgcctcaggttat 189  Q
    |||| ||||||| || ||||||||||||||| ||||||||| ||| ||||||||||||    
T  9372265 tgcgcttatgaggcgaataaatccttaaggacagtgacttcgtcatgcctcaggttat 9372208  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 219
Target Start/End: Complemental strand, 19930089 - 19930008
Alignment:
Q  132 tgcgattatgagacggataaatccttaaggatagtgacttcatcacgcctcaggttataattacataactgtttactattttgcaggt 219  Q
    |||| ||||||| ||||||||||||||||||  |||||||  |||||||||| |||||      ||||| ||||||||||||||||||    
T  19930089 tgcgcttatgaggcggataaatccttaaggacggtgactttgtcacgcctcatgttat------ataacggtttactattttgcaggt 19930008  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 219
Target Start/End: Complemental strand, 42253615 - 42253534
Alignment:
Q  132 tgcgattatgagacggataaatccttaaggatagtgacttcatcacgcctcaggttataattacataactgtttactattttgcaggt 219  Q
    |||| ||||||| ||| |||||||||||||| ||||||||  |||||||||| |||||      ||||| ||||||||||||||||||    
T  42253615 tgcgcttatgaggcgggtaaatccttaaggacagtgactttgtcacgcctcatgttat------ataacggtttactattttgcaggt 42253534  T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 137 - 260
Target Start/End: Complemental strand, 21501298 - 21501181
Alignment:
Q  137 ttatgagacggataaatccttaaggatagtgacttcatcacgcctcaggttataattacataactgtttactattttgcaggttagatatgagttgttgg 236  Q
    ||||||||||||||||||||||| ||||| |||||  ||||||||||  |||||      ||||| |||| |||||||||||||| ||||||||||||||    
T  21501298 ttatgagacggataaatccttaaagatagcgactttgtcacgcctcatattata------taactatttattattttgcaggttacatatgagttgttgg 21501205  T
Q  237 tgaaggatattgatagagtcatgt 260  Q
    ||||||| ||||| ||||| ||||    
T  21501204 tgaaggacattgacagagttatgt 21501181  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 39 - 93
Target Start/End: Complemental strand, 9111708 - 9111654
Alignment:
Q  39 aaaataccacttttccaccaacacaaaaactatttctttcttctcaatttttctt 93  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  9111708 aaaataccacttttccaccaacacaaaaactctttctttcttcccaatttttctt 9111654  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 189
Target Start/End: Complemental strand, 38828722 - 38828683
Alignment:
Q  150 aaatccttaaggatagtgacttcatcacgcctcaggttat 189  Q
    ||||||||||||||||||||||| |||||||||| |||||    
T  38828722 aaatccttaaggatagtgacttcgtcacgcctcaagttat 38828683  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 189
Target Start/End: Original strand, 43254179 - 43254236
Alignment:
Q  132 tgcgattatgagacggataaatccttaaggatagtgacttcatcacgcctcaggttat 189  Q
    |||| ||||||| || ||||||||||||||| ||||||||  |||||||||| |||||    
T  43254179 tgcgcttatgaggcgaataaatccttaaggacagtgactttgtcacgcctcatgttat 43254236  T

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Target: scaffold0076 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 81
Target Start/End: Complemental strand, 6983 - 6910
Alignment:
Q  8 tagcaatttggagtgacacttcctgattagaaaaataccacttttccaccaacacaaaaactatttctttcttc 81  Q
    ||||||||||||| |||||||| |||| |||||||||||||||||||||||||| ||||||| ||| |||||||    
T  6983 tagcaatttggagagacacttcttgatcagaaaaataccacttttccaccaacataaaaactctttttttcttc 6910  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 190
Target Start/End: Complemental strand, 2609655 - 2609597
Alignment:
Q  132 tgcgattatgagacggataaatccttaaggatagtgacttcatcacgcctcaggttata 190  Q
    |||| ||||||||| ||||||| |||||||||||||||||| |||||||||||||||||    
T  2609655 tgcgcttatgagacagataaatacttaaggatagtgacttcgtcacgcctcaggttata 2609597  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 15569635 - 15569688
Alignment:
Q  137 ttatgagacggataaatccttaaggatagtgacttcatcacgcctcaggttata 190  Q
    ||||||| ||||||||||| |||||| ||||||||  |||||||||||||||||    
T  15569635 ttatgaggcggataaatccctaaggacagtgactttgtcacgcctcaggttata 15569688  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 13815802 - 13815860
Alignment:
Q  132 tgcgattatgagacggataaatccttaaggatagtgacttcatcacgcctcaggttata 190  Q
    |||| ||||||| || ||||||||||||||| ||||||||  |||||||||| ||||||    
T  13815802 tgcgcttatgaggcgaataaatccttaaggacagtgactttgtcacgcctcatgttata 13815860  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 189
Target Start/End: Original strand, 15169999 - 15170056
Alignment:
Q  132 tgcgattatgagacggataaatccttaaggatagtgacttcatcacgcctcaggttat 189  Q
    |||| ||||||| | |||||||  ||||||| ||||||||||||||| ||||||||||    
T  15169999 tgcgtttatgaggctgataaatttttaaggacagtgacttcatcacgtctcaggttat 15170056  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 189
Target Start/End: Complemental strand, 11914111 - 11914059
Alignment:
Q  137 ttatgagacggataaatccttaaggatagtgacttcatcacgcctcaggttat 189  Q
    |||||||||||||||||||||||||||| ||||||| |||||||| |||||||    
T  11914111 ttatgagacggataaatccttaaggataatgacttcgtcacgccttaggttat 11914059  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 188
Target Start/End: Complemental strand, 31767496 - 31767445
Alignment:
Q  137 ttatgagacggataaatccttaaggatagtgacttcatcacgcctcaggtta 188  Q
    ||||||| |||||||||||||||||||||||| ||  |||||||||| ||||    
T  31767496 ttatgaggcggataaatccttaaggatagtgattttgtcacgcctcatgtta 31767445  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 190
Target Start/End: Complemental strand, 19888206 - 19888148
Alignment:
Q  132 tgcgattatgagacggataaatccttaaggatagtgacttcatcacgcctcaggttata 190  Q
    |||| ||||||| |||||||||||||||||| ||||   ||| ||||||||||||||||    
T  19888206 tgcgcttatgaggcggataaatccttaaggacagtgcgatcagcacgcctcaggttata 19888148  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 260
Target Start/End: Complemental strand, 66210 - 66102
Alignment:
Q  146 ggataaatccttaaggatagtgacttcatcacgcctcaggttataattacataactgtttactattttgcaggttagatatgagttgttggtgaaggata 245  Q
    ||||||||||||||  |||||||||| ||||||||||| |||||      | |||| |||| ||||||  | |||| |||||||||||||||||| ||||    
T  66210 ggataaatccttaaatatagtgactttatcacgcctcatgttat------acaactatttattattttataagttacatatgagttgttggtgaaagata 66117  T
Q  246 ttgatagagtcatgt 260  Q
    |||| ||||| ||||    
T  66116 ttgacagagttatgt 66102  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 226 - 260
Target Start/End: Complemental strand, 27083055 - 27083021
Alignment:
Q  226 tgagttgttggtgaaggatattgatagagtcatgt 260  Q
    |||||||||||||||||||||||||||||||||||    
T  27083055 tgagttgttggtgaaggatattgatagagtcatgt 27083021  T

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