View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18852_low_41 (Length: 221)
Name: NF18852_low_41
Description: NF18852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18852_low_41 |
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| [»] chr1 (6 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 10 - 221
Target Start/End: Complemental strand, 48043601 - 48043390
Alignment:
| Q |
10 |
tccattcatatgatgttgtttcacatgagcaggggactgaaatcaatcaatgggagggaagtttgttacatcatgatctcatgtaaaaactccaacaaca |
109 |
Q |
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| T |
48043601 |
tccattcatatgatgttgtttcacatgagcaggggactgaaatcaatcaatgggagggaagtttgttacatcatgatctcatgtaaaaactccaacaaca |
48043502 |
T |
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| Q |
110 |
ttgactcagtaatttgtcggtttgtaaaacattctaaagcaaacaactgaagctctcaacttctgccatatgaatctatttgaatgttacattgcagact |
209 |
Q |
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| T |
48043501 |
ttgactcagtaatttgtcggtttgtaaaacattctaaagcaaacaactgaagctctcaacttctgccatatgaatctatttgaatgttacattgcagact |
48043402 |
T |
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| Q |
210 |
gatatcaaggtc |
221 |
Q |
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| T |
48043401 |
gatatcaaggtc |
48043390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 4 - 221
Target Start/End: Complemental strand, 48056824 - 48056608
Alignment:
| Q |
4 |
gtactttccattcatatgatgttgtttcacatgagcaggggactgaaatcaatcaatgggagggaagtttgttacatcatgatctcatgtaaaaactcca |
103 |
Q |
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| T |
48056824 |
gtactttcctttcat-tgatgttgtttcacgtgcactggagactgaaatcaataaatgagagagaagtttgttgcatcatgatctcaagtaaaaactcca |
48056726 |
T |
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| Q |
104 |
acaacattgactcagtaatttgtcggtttgtaaaacattctaaagcaaacaactgaagctctcaacttctgccatatgaatctatttgaatgttacattg |
203 |
Q |
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| T |
48056725 |
ccaacatcgactcagttatttgttggtttgtaaaacattctaacgcaaagaactgaagctctcaacttctgccctaggattctatttgaatgttacattg |
48056626 |
T |
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| Q |
204 |
cagactgatatcaaggtc |
221 |
Q |
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| T |
48056625 |
cagactgatatcaaggtc |
48056608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 61 - 221
Target Start/End: Complemental strand, 48051480 - 48051332
Alignment:
| Q |
61 |
gggagggaagtttgttacatcatgatctcatgtaaaaactccaacaacattgactcagtaatttgtcggtttgtaaaacattctaaagcaaacaactgaa |
160 |
Q |
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| T |
48051480 |
gggagggaagtttgttacatcatgatctcgtgtaaaaactccaacaacatggactcagttat------------aaaacattctaaagcaaacaattgaa |
48051393 |
T |
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| Q |
161 |
gctctcaacttctgccatatgaatctatttgaatgttacattgcagactgatatcaaggtc |
221 |
Q |
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| T |
48051392 |
gctctcaactcttgccatatgaatcaatttgaatgttacattgcagactgatatcaaggtc |
48051332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 39 - 217
Target Start/End: Complemental strand, 48037528 - 48037345
Alignment:
| Q |
39 |
caggggactgaaatcaatcaatgggagggaagtttgttacatcatgatctcatgtaaaaactccaacaacatt----gactcagtaatttgtcggtttgt |
134 |
Q |
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| T |
48037528 |
caggggactggaatccatcaatgaaagagaagtttgttgcttcatgatctcatgtaaaaacttcaccaacattaattgactcagttattagttgatttgt |
48037429 |
T |
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| Q |
135 |
aaaacattctaaagcaaacaactgaagctctcaa-cttctgccatatgaatctatttgaatgttacattgcagactgatatcaa |
217 |
Q |
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| T |
48037428 |
aaagcattctaaagcaaagaacttaagctctcaaacttctgccctgtgaatctatttgaatgttgcattgcagactgatatcaa |
48037345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 3 - 96
Target Start/End: Complemental strand, 48051574 - 48051481
Alignment:
| Q |
3 |
cgtactttccattcatatgatgttgtttcacatgagcaggggactgaaatcaatcaatgggagggaagtttgttacatcatgatctcatgtaaa |
96 |
Q |
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| T |
48051574 |
cgtacttgcctttcatatgatgttgtttcacatgtgcaggggactgaaatcaatatatgggaaggaagtttgttacatcatgatctcgtgtaaa |
48051481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 86 - 220
Target Start/End: Complemental strand, 48045331 - 48045200
Alignment:
| Q |
86 |
tctcatgtaaaaactccaacaacattgactcagtaatttgtcggtttgtaaaacatt---ctaaagcaaacaactgaagctctcaacttctgccatatga |
182 |
Q |
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| T |
48045331 |
tctcatgtaaaaactacaccaacattggctcagttatgcgttgctttgtaaaacatttttctaaagcaaagaact------ctcaactcctgccctatga |
48045238 |
T |
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| Q |
183 |
atctatttgaatgttacattgcagactgatatcaaggt |
220 |
Q |
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| T |
48045237 |
atctatttgaatgttgcattgcagattgatatcaaggt |
48045200 |
T |
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