View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18852_low_44 (Length: 208)
Name: NF18852_low_44
Description: NF18852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18852_low_44 |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 1e-95; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 19 - 195
Target Start/End: Complemental strand, 43023196 - 43023020
Alignment:
| Q |
19 |
atgctggttacctgtgtcagttaatttggctaacttgtctcttgttacatttgttaaggacatttcattcagcattgccctacaaatggtgatgcaactt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43023196 |
atgctggttacctgtgtcagttaatttggctaacttgtctcttgttacatttgttaaggacatttcattcagcattgccctacaaatggtgatgcaactt |
43023097 |
T |
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| Q |
119 |
ttgacatcaaaaaactcaggcaacctactggtattcctagatccatgctgatggtaaatccacaaggttcctatgct |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43023096 |
ttgacatcaaaaaactcaggcaacctactggtattcctagatccatgctgatggtaaatccacaaggttcctatgct |
43023020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 19 - 195
Target Start/End: Complemental strand, 35061867 - 35061691
Alignment:
| Q |
19 |
atgctggttacctgtgtcagttaatttggctaacttgtctcttgttacatttgttaaggacatttcattcagcattgccctacaaatggtgatgcaactt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35061867 |
atgctggttacctgtgtcagttaatttggctaacttgtctcttgttacatttgttaaggacatttcattcagcattgccctacaaatggtgatgcaactt |
35061768 |
T |
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| Q |
119 |
ttgacatcaaaaaactcaggcaacctactggtattcctagatccatgctgatggtaaatccacaaggttcctatgct |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
35061767 |
ttgacatcaaaaaactcaggcaacctactggtattcctagatctatgctgatggtaaatccacaaggttcctatgct |
35061691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 19 - 195
Target Start/End: Complemental strand, 42812818 - 42812642
Alignment:
| Q |
19 |
atgctggttacctgtgtcagttaatttggctaacttgtctcttgttacatttgttaaggacatttcattcagcattgccctacaaatggtgatgcaactt |
118 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
42812818 |
atgctggttacctgtgtcagttaatttggctaacttgtctcttgttacatctgttaaggacatttcattcagcattgccctacaaatggtgattccactt |
42812719 |
T |
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| Q |
119 |
ttgacatcaaaaaactcaggcaacctactggtattcctagatccatgctgatggtaaatccacaaggttcctatgct |
195 |
Q |
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|||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
42812718 |
ttgacatcaaaaaagtcaggcagcctactggtattcctagatctatgctgatggtaaatccacaaggttcctatgct |
42812642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 68 - 195
Target Start/End: Original strand, 41564677 - 41564804
Alignment:
| Q |
68 |
tttgttaaggacatttcattcagcattgccctacaaatggtgatgcaacttttgacatcaaaaaactcaggcaacctactggtattcctagatccatgct |
167 |
Q |
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|||||| |||||||||||||||||| ||||| |||||||||||| ||| || |||| |||| | | ||| |||||||||||||||||||||||| ||||| |
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| T |
41564677 |
tttgtttaggacatttcattcagcactgccccacaaatggtgatccaaattatgacgtcaagagagtcaagcaacctactggtattcctagatctatgct |
41564776 |
T |
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| Q |
168 |
gatggtaaatccacaaggttcctatgct |
195 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
41564777 |
gatggtaaatccacaaggttcctatgct |
41564804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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