View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18852_low_5 (Length: 543)
Name: NF18852_low_5
Description: NF18852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18852_low_5 |
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| [»] scaffold0856 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 441; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 1 - 535
Target Start/End: Original strand, 27659116 - 27659636
Alignment:
| Q |
1 |
agtatttatatatgagaggtaacttcttaatcttgaagagaaaggtagtaatatagttgctgaattgatttcataagtgtggacttcagagtcttagaga |
100 |
Q |
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||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27659116 |
agtatttatatatgagagggaacttcttaatctttaagagaaaggtagtaatatagttgctgaattgatttcataagtgtggacttcagagtcttagaga |
27659215 |
T |
|
| Q |
101 |
acaagttattccactattttgctatctgtagtagtgctgctatattagggggtgcagggagtgtttttctgcatgggccttttctgctatctggcctgag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
27659216 |
acaagttattccactattttgctatctgtagtagtgctgctatattagggggtgcagggagtgtttttctgcctgggccttttctgctatctggcctgag |
27659315 |
T |
|
| Q |
201 |
aagggaggtctgtaatgtttgtgaggcctgtttgtgatttctggtctgctgtttgtgccacccctgttttctggtatgctgtttgtgtttatatatgaac |
300 |
Q |
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| T |
27659316 |
aagggaggtctgtg-------------ctgtttgtgatttctggtctgctgtttgtgccacccctgttttctggtatgctgtttgtgtttatat--gaac |
27659400 |
T |
|
| Q |
301 |
aaagtccatgcttaaattatatttaatgtttttgtttgtgatgcttacatttt-ttctgatgtttttgctgcattatatttgatgcaataagcttgtaaa |
399 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
27659401 |
aaagtccttgcttaaattatatttaatgtttttgtttgtgatgcttacatttttttctgatgttttagctgcattatatttgatgcaataagcttgtaaa |
27659500 |
T |
|
| Q |
400 |
tcactatgtttgcaatataacttattattgatctaattgagtgattttgtgcagttttggtgtgccaattgcacccacaattgaaaatttgaggatagtt |
499 |
Q |
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| T |
27659501 |
tcaccatgtttgcaatataacttattattgatctaattgagtgattttgtgcagttttggtgtgccaattgcacccacaattgaaaatttgtggatagtt |
27659600 |
T |
|
| Q |
500 |
caaatgctgttttggattgtggtagtattgatgatg |
535 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
27659601 |
caaatgctgttttggattgtggtagtattgatgatg |
27659636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 120 - 275
Target Start/End: Original strand, 32017255 - 32017413
Alignment:
| Q |
120 |
tgctatctgtagtagtgctgctatattaggggg-tgcagggagtgttttt--ctgcatgggccttttctgctatctggcctgagaagggaggtctgtaat |
216 |
Q |
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|||||||||||||||||||||| | || ||||| ||| ||||||||| || |||| ||||| ||||||||||||||||||| |||||||||||| | | |
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| T |
32017255 |
tgctatctgtagtagtgctgctgtcttgggggggtgcggggagtgttgtttactgcctgggctttttctgctatctggcctgggaagggaggtctttgct |
32017354 |
T |
|
| Q |
217 |
gtttgtgaggcctgtttgtgatttctggtctgctgtttgtgccacccctgttttctggt |
275 |
Q |
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||||||||||||| ||| || |||||||||||||||||| || ||||| ||||||||| |
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| T |
32017355 |
gtttgtgaggcctttttatgctttctggtctgctgtttgcacctccccttttttctggt |
32017413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 404; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 535
Target Start/End: Complemental strand, 37604972 - 37604440
Alignment:
| Q |
1 |
agtatttatatatgagaggtaacttcttaatcttgaagagaaaggtagtaatatagttgctgaattgatttcataagtgtggacttcagagtcttagaga |
100 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||| |
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| T |
37604972 |
agtatttatatatgagagggaacttcataatcttgaagagaaaggtaggaatatagttgttgcattgatttcataagtgtggacttcagagtcttagaga |
37604873 |
T |
|
| Q |
101 |
acaagttattccactattttgctatctgtagtagtgctgctatattagggggtgcagggagtgtttttctgcatgggccttttctgctatctggcctgag |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| || |||||||||||||||||||||| || | |
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| T |
37604872 |
acaagttatttcactattttgctatctgtagtagtgctactatcttagggggtgcagggagtgtttttatggctgggccttttctgctatctggcttggg |
37604773 |
T |
|
| Q |
201 |
aagggaggtctgtaatgtttgtgaggcctgtttgtgatttctggtctgctgtttgtgccacccctgttttctggtatgctgtttgtgtttatatatgaac |
300 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||| |||||||| |
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| T |
37604772 |
aagggaggtctgtgctgtttgtgaggcctgtttgtgatttctggtctgctgtttgcgcctcccctgttttttggtatgctgtttgtgttt--atatgaac |
37604675 |
T |
|
| Q |
301 |
aaagtccatgcttaaattatatttaatgtttttgtttgtgatgcttacattttttctgatgtttttgctgcattatatttgatgcaataagcttgtaaat |
400 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
37604674 |
aaagttcatgcttaaattatatttaatgtttttgtttgtgatgcttacgttgtttctgatgtttttgctacattatatttgatgcaataagcttgtaaat |
37604575 |
T |
|
| Q |
401 |
cactatgtttgcaatataacttattattgatctaattgagtgattttgtgcagttttggtgtgccaattgcacccacaattgaaaatttgaggatagttc |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
37604574 |
cactatgtttgcaatataacttattattgatctaattaagtaattttgtgcagttttggtgtgccaatttcacccacaattgaaaatttatggatagttc |
37604475 |
T |
|
| Q |
501 |
aaatgctgttttggattgtggtagtattgatgatg |
535 |
Q |
| |
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||||| | || |||||||||||||||||||||||| |
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| T |
37604474 |
aaatgttcttgtggattgtggtagtattgatgatg |
37604440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 375 - 460
Target Start/End: Original strand, 38776612 - 38776697
Alignment:
| Q |
375 |
atatttgatgcaataagcttgtaaatcactatgtttgcaatataacttattattgatctaattgagtgattttgtgcagttttggt |
460 |
Q |
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||||| |||| |||||||||||||||| |||||||||||| |||||||||||| ||||| ||||| | ||||||||||||||||| |
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| T |
38776612 |
atattcgatgaaataagcttgtaaatctctatgtttgcaacataacttattatagatcttattgacttcttttgtgcagttttggt |
38776697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 436 - 535
Target Start/End: Original strand, 5743129 - 5743228
Alignment:
| Q |
436 |
ttgagtgattttgtgcagttttggtgtgccaattgcacccacaattgaaaatttgaggatagttcaaatgctgttttggattgtggtagtattgatgatg |
535 |
Q |
| |
|
|||||| ||||||||||| ||||| ||| ||||||| |||||||||||| ||| |||| || |||||||| || ||||||||||||||||| |||||| |
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| T |
5743129 |
ttgagttattttgtgcagatttggggtgtcaattgcccccacaattgaacattcatggatggtccaaatgcttttgtggattgtggtagtattcatgatg |
5743228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 436 - 535
Target Start/End: Complemental strand, 33360423 - 33360324
Alignment:
| Q |
436 |
ttgagtgattttgtgcagttttggtgtgccaattgcacccacaattgaaaatttgaggatagttcaaatgctgttttggattgtggtagtattgatgatg |
535 |
Q |
| |
|
|||||| ||||||||||| ||||| ||| ||||||| |||||||||||| ||| ||||| | |||||||| || ||||| ||||||||||| |||||| |
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|
| T |
33360423 |
ttgagttattttgtgcagatttggggtgtcaattgcccccacaattgaacattcatggataatccaaatgcttttgtggatagtggtagtattcatgatg |
33360324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 120 - 255
Target Start/End: Original strand, 25542594 - 25542728
Alignment:
| Q |
120 |
tgctatctgtagtagtgctgctatattagggggtgcagggagtgtttttctgcatgggccttttctgctatctggcctgagaagggaggtctgtaatgtt |
219 |
Q |
| |
|
|||||||| |||||| ||||| | |||||| |||| |||||| ||||||||| |||| ||||| | |||||| |||| | |||| |||| | |||| |
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| T |
25542594 |
tgctatctttagtagcactgctgtcttagggagtgctgggagtatttttctgcctggggctttttttctatctaacctgggt-gggaagtcttttctgtt |
25542692 |
T |
|
| Q |
220 |
tgtgaggcctgtttgtgatttctggtctgctgtttg |
255 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |
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|
| T |
25542693 |
tgtgaggcctgtttgtgttttctggtctgctgtttg |
25542728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 23 - 95
Target Start/End: Original strand, 25007242 - 25007314
Alignment:
| Q |
23 |
cttcttaatcttgaagagaaaggtagtaatatagttgctgaattgatttcataagtgtggacttcagagtctt |
95 |
Q |
| |
|
|||| |||||||||||| || ||||| ||||||| | || |||||||||||||||||||||||||||||||| |
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|
| T |
25007242 |
cttcataatcttgaagaaaatggtaggaatataggcgttgcattgatttcataagtgtggacttcagagtctt |
25007314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 144 - 203
Target Start/End: Original strand, 23352817 - 23352876
Alignment:
| Q |
144 |
attagggggtgcagggagtgtttttctgcatgggccttttctgctatctggcctgagaag |
203 |
Q |
| |
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||||||||||||||||||| ||||| | | ||||||||||||||| ||||||||| |||| |
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|
| T |
23352817 |
attagggggtgcagggagtatttttattcctgggccttttctgctgtctggcctgggaag |
23352876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0856 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0856
Description:
Target: scaffold0856; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 436 - 535
Target Start/End: Complemental strand, 670 - 571
Alignment:
| Q |
436 |
ttgagtgattttgtgcagttttggtgtgccaattgcacccacaattgaaaatttgaggatagttcaaatgctgttttggattgtggtagtattgatgatg |
535 |
Q |
| |
|
|||||| ||||||||||| ||||| ||| ||||||| |||||||||||| ||| ||||| | |||||||| || ||||| ||||||||||| |||||| |
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|
| T |
670 |
ttgagttattttgtgcagatttggggtgtcaattgcccccacaattgaacattcatggataatccaaatgcttttgtggatagtggtagtattcatgatg |
571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 436 - 535
Target Start/End: Complemental strand, 18084699 - 18084600
Alignment:
| Q |
436 |
ttgagtgattttgtgcagttttggtgtgccaattgcacccacaattgaaaatttgaggatagttcaaatgctgttttggattgtggtagtattgatgatg |
535 |
Q |
| |
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|||||| ||||||||||| ||||| ||| ||||||| |||||||||||| ||| ||||| | |||||||| || ||||| ||||||||||| |||||| |
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| T |
18084699 |
ttgagttattttgtgcagatttggggtgtcaattgcccccacaattgaacattcatggataatccaaatgcttttgtggatagtggtagtattcatgatg |
18084600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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